Read summary
Genome coverage
The plot below illustrates depth of coverage. For adequate variant calling, depth should be at least 50X in any region. There will be several plots if there were multiple references. Use the dropdown menu to select different samples.
Variant calling
The following tables and figures are derived from the output of bcftools stats.Variant counts:
| sample | MNPs | SNPs | indels | multiallelic SNP sites | multiallelic sites | no-ALTs | others | records |
|---|---|---|---|---|---|---|---|---|
| barcode01 | 3 | 309 | 453 | 0 | 0 | 0 | 245 | 1010 |
| barcode02 | 3 | 309 | 443 | 0 | 0 | 0 | 246 | 1001 |
Transitions and tranversions:
| sample | ts | tv | ts/tv | ts (1st ALT) | tv (1st ALT) | ts/tv (1st ALT) |
|---|---|---|---|---|---|---|
| barcode01 | 91 | 218 | 0.42 | 91 | 218 | 0.42 |
| barcode02 | 92 | 217 | 0.42 | 92 | 217 | 0.42 |
Base substitution types and indel lengths:
Base substitutions were symmetrised by pairing. You can select different samples from the dropdown menu.
Annotations
The contigs were annotated with Prokka. You can use the dropdown menu to select different samples.| Contig | ID | Start | End | Strand | Gene | Product | EC number |
|---|---|---|---|---|---|---|---|
| lmonocytogenes | JKGLNABD_00001 | 49 | 579 | + | recG | ATP-dependent DNA helicase RecG | 3.6.4.12 |
| lmonocytogenes | JKGLNABD_00002 | 761 | 1330 | + | fapR | Transcription factor FapR | - |
| lmonocytogenes | JKGLNABD_00003 | 1351 | 2364 | + | plsX | Phosphate acyltransferase | 2.3.1.274 |
| lmonocytogenes | JKGLNABD_00004 | 2357 | 2524 | + | - | hypothetical protein | - |
| lmonocytogenes | JKGLNABD_00005 | 2599 | 3297 | + | fabD | Malonyl CoA-acyl carrier protein transacylase | 2.3.1.39 |
| lmonocytogenes | JKGLNABD_00006 | 3301 | 4044 | + | fabG | 3-oxoacyl-[acyl-carrier-protein] reductase FabG | 1.1.1.100 |
| lmonocytogenes | JKGLNABD_00007 | 4151 | 4384 | + | acpA | Acyl carrier protein | - |
| lmonocytogenes | JKGLNABD_00008 | 4579 | 5268 | + | rnc | Ribonuclease 3 | 3.1.26.3 |
| lmonocytogenes | JKGLNABD_00009 | 5291 | 8851 | + | smc | Chromosome partition protein Smc | - |
| lmonocytogenes | JKGLNABD_00010 | 8866 | 9852 | + | ftsY | Signal recognition particle receptor FtsY | - |
| lmonocytogenes | JKGLNABD_00011 | 9965 | 10297 | + | - | hypothetical protein | - |
| lmonocytogenes | JKGLNABD_00012 | 10310 | 11662 | + | ffh | Signal recognition particle protein | - |
| lmonocytogenes | JKGLNABD_00013 | 11805 | 12701 | + | - | hypothetical protein | - |
| lmonocytogenes | JKGLNABD_00014 | 13181 | 15436 | + | - | hypothetical protein | - |
| lmonocytogenes | JKGLNABD_00015 | 15510 | 17168 | + | - | hypothetical protein | - |
| lmonocytogenes | JKGLNABD_00016 | 17271 | 17543 | + | rpsP | 30S ribosomal protein S16 | - |
| lmonocytogenes | JKGLNABD_00017 | 17560 | 17790 | + | - | hypothetical protein | - |
| lmonocytogenes | JKGLNABD_00018 | 17901 | 18635 | + | puuD | Gamma-glutamyl-gamma-aminobutyrate hydrolase PuuD | 3.5.1.94 |
| lmonocytogenes | JKGLNABD_00019 | 18663 | 19049 | + | - | hypothetical protein | - |
| lmonocytogenes | JKGLNABD_00020 | 19059 | 19577 | + | rimM | Ribosome maturation factor RimM | - |
| lmonocytogenes | JKGLNABD_00021 | 19577 | 20314 | + | trmD | tRNA (guanine-N(1)-)-methyltransferase | 2.1.1.228 |
| lmonocytogenes | JKGLNABD_00022 | 20334 | 20735 | + | - | hypothetical protein | - |
| lmonocytogenes | JKGLNABD_00023 | 20755 | 21471 | - | gloC | Hydroxyacylglutathione hydrolase GloC | 3.1.2.6 |
| lmonocytogenes | JKGLNABD_00024 | 21468 | 22079 | - | azoR | FMN-dependent NADH-azoreductase | 1.7.1.17 |
| lmonocytogenes | JKGLNABD_00025 | 22079 | 22549 | - | - | hypothetical protein | - |
| lmonocytogenes | JKGLNABD_00026 | 22722 | 23066 | + | rplS | 50S ribosomal protein L19 | - |
| lmonocytogenes | JKGLNABD_00027 | 23849 | 24742 | + | inlC | Internalin C | - |
| lmonocytogenes | JKGLNABD_00028 | 25196 | 25699 | + | infC | Translation initiation factor IF-3 | - |
| lmonocytogenes | JKGLNABD_00029 | 25721 | 25921 | + | rpmI | 50S ribosomal protein L35 | - |
| lmonocytogenes | JKGLNABD_00030 | 25961 | 26320 | + | rplT | 50S ribosomal protein L20 | - |
| lmonocytogenes | JKGLNABD_00031 | 26362 | 27117 | - | exoA | Exodeoxyribonuclease | 3.1.11.2 |
| lmonocytogenes | JKGLNABD_00032 | 27201 | 27731 | + | - | hypothetical protein | - |
| lmonocytogenes | JKGLNABD_00033 | 27789 | 28685 | + | pepT_1 | Peptidase T | 3.4.11.4 |
| lmonocytogenes | JKGLNABD_00034 | 28657 | 29022 | + | pepT_2 | Peptidase T | 3.4.11.4 |
| lmonocytogenes | JKGLNABD_00035 | 29041 | 29391 | - | - | hypothetical protein | - |
| lmonocytogenes | JKGLNABD_00036 | 29453 | 30238 | - | ylmA | putative ABC transporter ATP-binding protein YlmA | 3.6.3.- |
| lmonocytogenes | JKGLNABD_00037 | 30292 | 30900 | + | yedJ | putative protein YedJ | - |
| lmonocytogenes | JKGLNABD_00038 | 31241 | 32786 | + | - | 16S ribosomal RNA | - |
| lmonocytogenes | JKGLNABD_00039 | 33035 | 35961 | + | - | 23S ribosomal RNA | - |
| lmonocytogenes | JKGLNABD_00040 | 36044 | 36153 | + | - | 5S ribosomal RNA | - |
| lmonocytogenes | JKGLNABD_00041 | 36284 | 36808 | + | - | hypothetical protein | - |
| lmonocytogenes | JKGLNABD_00042 | 37014 | 37235 | + | purE_1 | N5-carboxyaminoimidazole ribonucleotide mutase | 5.4.99.18 |
| lmonocytogenes | JKGLNABD_00043 | 37232 | 37501 | + | purE_2 | N5-carboxyaminoimidazole ribonucleotide mutase | 5.4.99.18 |
| lmonocytogenes | JKGLNABD_00044 | 37485 | 38618 | + | purK | N5-carboxyaminoimidazole ribonucleotide synthase | 6.3.4.18 |
| lmonocytogenes | JKGLNABD_00045 | 38637 | 39929 | + | purB | Adenylosuccinate lyase | 4.3.2.2 |
| lmonocytogenes | JKGLNABD_00046 | 40010 | 40189 | + | purC_1 | Phosphoribosylaminoimidazole-succinocarboxamide synthase | 6.3.2.6 |
| lmonocytogenes | JKGLNABD_00047 | 40248 | 40724 | + | purC_2 | Phosphoribosylaminoimidazole-succinocarboxamide synthase | 6.3.2.6 |
| lmonocytogenes | JKGLNABD_00048 | 40736 | 40981 | + | purS | Phosphoribosylformylglycinamidine synthase subunit PurS | 6.3.5.3 |
| lmonocytogenes | JKGLNABD_00049 | 40985 | 41668 | + | purQ | Phosphoribosylformylglycinamidine synthase subunit PurQ | 6.3.5.3 |
| lmonocytogenes | JKGLNABD_00050 | 41661 | 43880 | + | purL | Phosphoribosylformylglycinamidine synthase subunit PurL | 6.3.5.3 |
| lmonocytogenes | JKGLNABD_00051 | 43865 | 45292 | + | purF | Amidophosphoribosyltransferase | 2.4.2.14 |
| lmonocytogenes | JKGLNABD_00052 | 45311 | 46360 | + | purM | Phosphoribosylformylglycinamidine cyclo-ligase | 6.3.3.1 |
| lmonocytogenes | JKGLNABD_00053 | 46357 | 46923 | + | purN | Phosphoribosylglycinamide formyltransferase | 2.1.2.2 |
| lmonocytogenes | JKGLNABD_00054 | 46929 | 48458 | + | purH | Bifunctional purine biosynthesis protein PurH | - |
| lmonocytogenes | JKGLNABD_00055 | 48483 | 49745 | + | purD | Phosphoribosylamine--glycine ligase | 6.3.4.13 |
| lmonocytogenes | JKGLNABD_00056 | 49860 | 50180 | + | - | hypothetical protein | - |
| lmonocytogenes | JKGLNABD_00057 | 50494 | 51849 | - | - | hypothetical protein | - |
| lmonocytogenes | JKGLNABD_00058 | 52055 | 52732 | + | pcrB | Heptaprenylglyceryl phosphate synthase | 2.5.1.- |
| lmonocytogenes | JKGLNABD_00059 | 52773 | 54992 | + | pcrA | ATP-dependent DNA helicase PcrA | 3.6.4.12 |
| lmonocytogenes | JKGLNABD_00060 | 55018 | 57033 | + | ligA | DNA ligase | 6.5.1.2 |
| lmonocytogenes | JKGLNABD_00061 | 57030 | 57860 | + | - | hypothetical protein | - |
| lmonocytogenes | JKGLNABD_00062 | 57857 | 58144 | + | - | hypothetical protein | - |
| lmonocytogenes | JKGLNABD_00063 | 58269 | 58562 | + | gatC | Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C | 6.3.5.- |
| lmonocytogenes | JKGLNABD_00064 | 58586 | 60037 | + | gatA | Glutamyl-tRNA(Gln) amidotransferase subunit A | 6.3.5.7 |
| lmonocytogenes | JKGLNABD_00065 | 60049 | 61479 | + | gatB | Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B | 6.3.5.- |
| lmonocytogenes | JKGLNABD_00066 | 61625 | 62557 | + | dagK | Diacylglycerol kinase | 2.7.1.107 |
| lmonocytogenes | JKGLNABD_00067 | 62705 | 63460 | + | - | hypothetical protein | - |
| lmonocytogenes | JKGLNABD_00068 | 63484 | 64845 | + | rlmCD | 23S rRNA (uracil-C(5))-methyltransferase RlmCD | 2.1.1.189 |
| lmonocytogenes | JKGLNABD_00069 | 65180 | 65734 | + | - | hypothetical protein | - |
| lmonocytogenes | JKGLNABD_00070 | 65765 | 66238 | - | aroK | Shikimate kinase | 2.7.1.71 |
| lmonocytogenes | JKGLNABD_00071 | 66462 | 66971 | + | - | hypothetical protein | - |
| lmonocytogenes | JKGLNABD_00072 | 67100 | 67867 | + | bceA | Bacitracin export ATP-binding protein BceA | - |
| lmonocytogenes | JKGLNABD_00073 | 67857 | 69323 | + | bceB | Bacitracin export permease protein BceB | - |
| lmonocytogenes | JKGLNABD_00074 | 69326 | 69835 | + | - | hypothetical protein | - |
| lmonocytogenes | JKGLNABD_00075 | 69898 | 70575 | + | graR | Response regulator protein GraR | - |
| lmonocytogenes | JKGLNABD_00076 | 70645 | 71520 | + | - | hypothetical protein | - |
| lmonocytogenes | JKGLNABD_00077 | 71541 | 71999 | + | - | hypothetical protein | - |
| lmonocytogenes | JKGLNABD_00078 | 72019 | 73758 | + | adeC | Adenine deaminase | 3.5.4.2 |
| lmonocytogenes | JKGLNABD_00079 | 73780 | 74820 | + | graS | Sensor histidine kinase GraS | 2.7.13.3 |
| lmonocytogenes | JKGLNABD_00080 | 75214 | 75858 | + | artQ | Arginine transport system permease protein ArtQ | - |
| lmonocytogenes | JKGLNABD_00081 | 75869 | 76516 | + | glnQ | Glutamine transport ATP-binding protein GlnQ | - |
| lmonocytogenes | JKGLNABD_00082 | 76518 | 77333 | + | fliY | L-cystine-binding protein FliY | - |
| lmonocytogenes | JKGLNABD_00083 | 77425 | 78531 | + | hcxA | Hydroxycarboxylate dehydrogenase A | 1.1.1.- |
| lmonocytogenes | JKGLNABD_00084 | 78534 | 79052 | + | - | hypothetical protein | - |
| lmonocytogenes | JKGLNABD_00085 | 79049 | 79936 | - | gltC | HTH-type transcriptional regulator GltC | - |
| lmonocytogenes | JKGLNABD_00086 | 80129 | 84721 | + | gltA | Glutamate synthase [NADPH] large chain | 1.4.1.13 |
| lmonocytogenes | JKGLNABD_00087 | 84736 | 86205 | + | gltB | Glutamate synthase [NADPH] small chain | 1.4.1.13 |
| lmonocytogenes | JKGLNABD_00088 | 86250 | 87080 | - | araQ | L-arabinose transport system permease protein AraQ | - |
| lmonocytogenes | JKGLNABD_00089 | 87098 | 87991 | - | lacF | Lactose transport system permease protein LacF | - |
| lmonocytogenes | JKGLNABD_00090 | 88052 | 89296 | - | cycB | Cyclodextrin-binding protein | - |
| lmonocytogenes | JKGLNABD_00091 | 89725 | 91896 | + | - | Putative beta-xylosidase | 3.2.1.- |
| lmonocytogenes | JKGLNABD_00092 | 91899 | 95153 | + | - | 1%2C2-beta-oligoglucan phosphorylase | 2.4.1.333 |
| lmonocytogenes | JKGLNABD_00093 | 95201 | 96166 | + | rbsR | Ribose operon repressor | - |
| lmonocytogenes | JKGLNABD_00094 | 96226 | 97209 | + | iolU | scyllo-inositol 2-dehydrogenase (NADP(+)) IolU | 1.1.1.371 |
| lmonocytogenes | JKGLNABD_00095 | 97330 | 97698 | + | - | hypothetical protein | - |
| lmonocytogenes | JKGLNABD_00096 | 97691 | 98371 | + | - | Multidrug efflux system ATP-binding protein | 7.6.2.- |
| lmonocytogenes | JKGLNABD_00097 | 98364 | 99137 | + | - | hypothetical protein | - |
| lmonocytogenes | JKGLNABD_00098 | 99335 | 99886 | - | - | hypothetical protein | - |
| Contig | ID | Start | End | Strand | Gene | Product | EC number |
|---|---|---|---|---|---|---|---|
| lmonocytogenes | ABCBGGLL_00001 | 49 | 579 | + | recG | ATP-dependent DNA helicase RecG | 3.6.4.12 |
| lmonocytogenes | ABCBGGLL_00002 | 761 | 1330 | + | fapR | Transcription factor FapR | - |
| lmonocytogenes | ABCBGGLL_00003 | 1351 | 2364 | + | plsX | Phosphate acyltransferase | 2.3.1.274 |
| lmonocytogenes | ABCBGGLL_00004 | 2357 | 2524 | + | - | hypothetical protein | - |
| lmonocytogenes | ABCBGGLL_00005 | 2599 | 3297 | + | fabD | Malonyl CoA-acyl carrier protein transacylase | 2.3.1.39 |
| lmonocytogenes | ABCBGGLL_00006 | 3301 | 4044 | + | fabG | 3-oxoacyl-[acyl-carrier-protein] reductase FabG | 1.1.1.100 |
| lmonocytogenes | ABCBGGLL_00007 | 4151 | 4384 | + | acpA | Acyl carrier protein | - |
| lmonocytogenes | ABCBGGLL_00008 | 4579 | 5268 | + | rnc | Ribonuclease 3 | 3.1.26.3 |
| lmonocytogenes | ABCBGGLL_00009 | 5291 | 8851 | + | smc | Chromosome partition protein Smc | - |
| lmonocytogenes | ABCBGGLL_00010 | 8866 | 9852 | + | ftsY | Signal recognition particle receptor FtsY | - |
| lmonocytogenes | ABCBGGLL_00011 | 9965 | 10213 | + | - | hypothetical protein | - |
| lmonocytogenes | ABCBGGLL_00012 | 10311 | 11663 | + | ffh | Signal recognition particle protein | - |
| lmonocytogenes | ABCBGGLL_00013 | 11806 | 12717 | + | - | hypothetical protein | - |
| lmonocytogenes | ABCBGGLL_00014 | 13180 | 15435 | + | - | hypothetical protein | - |
| lmonocytogenes | ABCBGGLL_00015 | 15509 | 17167 | + | - | hypothetical protein | - |
| lmonocytogenes | ABCBGGLL_00016 | 17269 | 17541 | + | rpsP | 30S ribosomal protein S16 | - |
| lmonocytogenes | ABCBGGLL_00017 | 17558 | 17788 | + | - | hypothetical protein | - |
| lmonocytogenes | ABCBGGLL_00018 | 17899 | 18633 | + | puuD | Gamma-glutamyl-gamma-aminobutyrate hydrolase PuuD | 3.5.1.94 |
| lmonocytogenes | ABCBGGLL_00019 | 18661 | 19047 | + | - | hypothetical protein | - |
| lmonocytogenes | ABCBGGLL_00020 | 19057 | 19575 | + | rimM | Ribosome maturation factor RimM | - |
| lmonocytogenes | ABCBGGLL_00021 | 19575 | 20312 | + | trmD | tRNA (guanine-N(1)-)-methyltransferase | 2.1.1.228 |
| lmonocytogenes | ABCBGGLL_00022 | 20332 | 20733 | + | - | hypothetical protein | - |
| lmonocytogenes | ABCBGGLL_00023 | 20753 | 21469 | - | gloC | Hydroxyacylglutathione hydrolase GloC | 3.1.2.6 |
| lmonocytogenes | ABCBGGLL_00024 | 21466 | 22077 | - | azoR | FMN-dependent NADH-azoreductase | 1.7.1.17 |
| lmonocytogenes | ABCBGGLL_00025 | 22077 | 22547 | - | - | hypothetical protein | - |
| lmonocytogenes | ABCBGGLL_00026 | 22720 | 22992 | + | rplS | 50S ribosomal protein L19 | - |
| lmonocytogenes | ABCBGGLL_00027 | 23848 | 24741 | + | inlC | Internalin C | - |
| lmonocytogenes | ABCBGGLL_00028 | 25195 | 25698 | + | infC | Translation initiation factor IF-3 | - |
| lmonocytogenes | ABCBGGLL_00029 | 25720 | 25920 | + | rpmI | 50S ribosomal protein L35 | - |
| lmonocytogenes | ABCBGGLL_00030 | 25960 | 26319 | + | rplT | 50S ribosomal protein L20 | - |
| lmonocytogenes | ABCBGGLL_00031 | 26361 | 27116 | - | exoA | Exodeoxyribonuclease | 3.1.11.2 |
| lmonocytogenes | ABCBGGLL_00032 | 27200 | 27730 | + | - | hypothetical protein | - |
| lmonocytogenes | ABCBGGLL_00033 | 27788 | 29020 | + | pepT | Peptidase T | 3.4.11.4 |
| lmonocytogenes | ABCBGGLL_00034 | 29039 | 29389 | - | - | hypothetical protein | - |
| lmonocytogenes | ABCBGGLL_00035 | 29451 | 30236 | - | ylmA | putative ABC transporter ATP-binding protein YlmA | 3.6.3.- |
| lmonocytogenes | ABCBGGLL_00036 | 30290 | 30898 | + | yedJ | putative protein YedJ | - |
| lmonocytogenes | ABCBGGLL_00037 | 31239 | 32784 | + | - | 16S ribosomal RNA | - |
| lmonocytogenes | ABCBGGLL_00038 | 33033 | 35959 | + | - | 23S ribosomal RNA | - |
| lmonocytogenes | ABCBGGLL_00039 | 36042 | 36150 | + | - | 5S ribosomal RNA | - |
| lmonocytogenes | ABCBGGLL_00040 | 36281 | 36805 | + | - | hypothetical protein | - |
| lmonocytogenes | ABCBGGLL_00041 | 37011 | 37499 | + | purE | N5-carboxyaminoimidazole ribonucleotide mutase | 5.4.99.18 |
| lmonocytogenes | ABCBGGLL_00042 | 37483 | 38616 | + | purK | N5-carboxyaminoimidazole ribonucleotide synthase | 6.3.4.18 |
| lmonocytogenes | ABCBGGLL_00043 | 38635 | 39927 | + | purB | Adenylosuccinate lyase | 4.3.2.2 |
| lmonocytogenes | ABCBGGLL_00044 | 40008 | 40205 | + | purC_1 | Phosphoribosylaminoimidazole-succinocarboxamide synthase | 6.3.2.6 |
| lmonocytogenes | ABCBGGLL_00045 | 40247 | 40723 | + | purC_2 | Phosphoribosylaminoimidazole-succinocarboxamide synthase | 6.3.2.6 |
| lmonocytogenes | ABCBGGLL_00046 | 40735 | 40980 | + | purS | Phosphoribosylformylglycinamidine synthase subunit PurS | 6.3.5.3 |
| lmonocytogenes | ABCBGGLL_00047 | 40984 | 41667 | + | purQ | Phosphoribosylformylglycinamidine synthase subunit PurQ | 6.3.5.3 |
| lmonocytogenes | ABCBGGLL_00048 | 41660 | 43879 | + | purL | Phosphoribosylformylglycinamidine synthase subunit PurL | 6.3.5.3 |
| lmonocytogenes | ABCBGGLL_00049 | 43864 | 44922 | + | purF_1 | Amidophosphoribosyltransferase | 2.4.2.14 |
| lmonocytogenes | ABCBGGLL_00050 | 44919 | 45290 | + | purF_2 | Amidophosphoribosyltransferase | 2.4.2.14 |
| lmonocytogenes | ABCBGGLL_00051 | 45309 | 46382 | + | purM | Phosphoribosylformylglycinamidine cyclo-ligase | 6.3.3.1 |
| lmonocytogenes | ABCBGGLL_00052 | 46354 | 46920 | + | purN | Phosphoribosylglycinamide formyltransferase | 2.1.2.2 |
| lmonocytogenes | ABCBGGLL_00053 | 46926 | 48455 | + | purH | Bifunctional purine biosynthesis protein PurH | - |
| lmonocytogenes | ABCBGGLL_00054 | 48480 | 49742 | + | purD | Phosphoribosylamine--glycine ligase | 6.3.4.13 |
| lmonocytogenes | ABCBGGLL_00055 | 49857 | 50177 | + | - | hypothetical protein | - |
| lmonocytogenes | ABCBGGLL_00056 | 50491 | 51846 | - | - | hypothetical protein | - |
| lmonocytogenes | ABCBGGLL_00057 | 52052 | 52729 | + | pcrB | Heptaprenylglyceryl phosphate synthase | 2.5.1.- |
| lmonocytogenes | ABCBGGLL_00058 | 52770 | 53252 | + | pcrA_1 | ATP-dependent DNA helicase PcrA | 3.6.4.12 |
| lmonocytogenes | ABCBGGLL_00059 | 53219 | 53581 | + | pcrA_2 | ATP-dependent DNA helicase PcrA | 3.6.4.12 |
| lmonocytogenes | ABCBGGLL_00060 | 53589 | 54989 | + | pcrA_3 | ATP-dependent DNA helicase PcrA | 3.6.4.12 |
| lmonocytogenes | ABCBGGLL_00061 | 55015 | 57030 | + | ligA | DNA ligase | 6.5.1.2 |
| lmonocytogenes | ABCBGGLL_00062 | 57027 | 57857 | + | - | hypothetical protein | - |
| lmonocytogenes | ABCBGGLL_00063 | 58008 | 58142 | + | - | hypothetical protein | - |
| lmonocytogenes | ABCBGGLL_00064 | 58267 | 58560 | + | gatC | Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C | 6.3.5.- |
| lmonocytogenes | ABCBGGLL_00065 | 58584 | 60035 | + | gatA | Glutamyl-tRNA(Gln) amidotransferase subunit A | 6.3.5.7 |
| lmonocytogenes | ABCBGGLL_00066 | 60047 | 61477 | + | gatB | Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B | 6.3.5.- |
| lmonocytogenes | ABCBGGLL_00067 | 61623 | 62555 | + | dagK | Diacylglycerol kinase | 2.7.1.107 |
| lmonocytogenes | ABCBGGLL_00068 | 62703 | 63458 | + | - | hypothetical protein | - |
| lmonocytogenes | ABCBGGLL_00069 | 63482 | 64843 | + | rlmCD | 23S rRNA (uracil-C(5))-methyltransferase RlmCD | 2.1.1.189 |
| lmonocytogenes | ABCBGGLL_00070 | 65178 | 65732 | + | - | hypothetical protein | - |
| lmonocytogenes | ABCBGGLL_00071 | 65763 | 66236 | - | aroK | Shikimate kinase | 2.7.1.71 |
| lmonocytogenes | ABCBGGLL_00072 | 66460 | 66969 | + | - | hypothetical protein | - |
| lmonocytogenes | ABCBGGLL_00073 | 67098 | 67865 | + | bceA | Bacitracin export ATP-binding protein BceA | - |
| lmonocytogenes | ABCBGGLL_00074 | 67855 | 69834 | + | bceB | Bacitracin export permease protein BceB | - |
| lmonocytogenes | ABCBGGLL_00075 | 69897 | 70574 | + | graR | Response regulator protein GraR | - |
| lmonocytogenes | ABCBGGLL_00076 | 70644 | 71519 | + | - | hypothetical protein | - |
| lmonocytogenes | ABCBGGLL_00077 | 71608 | 72000 | + | - | hypothetical protein | - |
| lmonocytogenes | ABCBGGLL_00078 | 72016 | 73755 | + | adeC | Adenine deaminase | 3.5.4.2 |
| lmonocytogenes | ABCBGGLL_00079 | 73777 | 74817 | + | graS | Sensor histidine kinase GraS | 2.7.13.3 |
| lmonocytogenes | ABCBGGLL_00080 | 75215 | 75856 | + | yecS | L-cystine transport system permease protein YecS | - |
| lmonocytogenes | ABCBGGLL_00081 | 75867 | 76514 | + | glnQ | Glutamine transport ATP-binding protein GlnQ | - |
| lmonocytogenes | ABCBGGLL_00082 | 76516 | 77331 | + | fliY | L-cystine-binding protein FliY | - |
| lmonocytogenes | ABCBGGLL_00083 | 77423 | 78529 | + | hcxA | Hydroxycarboxylate dehydrogenase A | 1.1.1.- |
| lmonocytogenes | ABCBGGLL_00084 | 78532 | 79050 | + | - | hypothetical protein | - |
| lmonocytogenes | ABCBGGLL_00085 | 79047 | 79934 | - | gltC | HTH-type transcriptional regulator GltC | - |
| lmonocytogenes | ABCBGGLL_00086 | 80127 | 84719 | + | gltA | Glutamate synthase [NADPH] large chain | 1.4.1.13 |
| lmonocytogenes | ABCBGGLL_00087 | 84734 | 86203 | + | gltB | Glutamate synthase [NADPH] small chain | 1.4.1.13 |
| lmonocytogenes | ABCBGGLL_00088 | 86248 | 87078 | - | araQ | L-arabinose transport system permease protein AraQ | - |
| lmonocytogenes | ABCBGGLL_00089 | 87096 | 87989 | - | lacF | Lactose transport system permease protein LacF | - |
| lmonocytogenes | ABCBGGLL_00090 | 88050 | 89294 | - | cycB | Cyclodextrin-binding protein | - |
| lmonocytogenes | ABCBGGLL_00091 | 89723 | 91894 | + | - | Putative beta-xylosidase | 3.2.1.- |
| lmonocytogenes | ABCBGGLL_00092 | 91897 | 95151 | + | - | 1%2C2-beta-oligoglucan phosphorylase | 2.4.1.333 |
| lmonocytogenes | ABCBGGLL_00093 | 95199 | 96164 | + | rbsR | Ribose operon repressor | - |
| lmonocytogenes | ABCBGGLL_00094 | 96224 | 97207 | + | iolU | scyllo-inositol 2-dehydrogenase (NADP(+)) IolU | 1.1.1.371 |
| lmonocytogenes | ABCBGGLL_00095 | 97328 | 97696 | + | - | hypothetical protein | - |
| lmonocytogenes | ABCBGGLL_00096 | 97689 | 98369 | + | - | Multidrug efflux system ATP-binding protein | 7.6.2.- |
| lmonocytogenes | ABCBGGLL_00097 | 98362 | 99135 | + | - | hypothetical protein | - |
| lmonocytogenes | ABCBGGLL_00098 | 99333 | 99884 | - | - | hypothetical protein | - |