Read summary

Number of reads

Number of reads after applying read length and quality filters. Read counts will also reflect host depletion and unclassified reads (kraken2 approach) and unmapped reads (minimap2 approach). Percentages are calculated from reads after the filtering.

Note that in the minimap2 approach, there are two filters based on the mapping identity and coverage that can increase the number of unclassified sequences. This table shows the unmapped reads before both filters are applied.

index Reads Unclassified|Unmapped Unclassified|Unmapped (%)
barcode01 55991.0 4069.0 7.27
barcode02 73532.0 3986.0 5.42
barcode03 75666.0 96.0 0.13

Lineages

Sunburst

This visualization can be useful to interactively explore the taxonomic composition of the sample. It shows hierarchical data: each layer represents a taxonomic rank. The color indicates the abundance of that taxon in comparison with the total number of reads. Zooming into an specific taxon is possible by clicking on it.

This visualization can be useful to interactively explore the taxonomic composition of the sample. It shows hierarchical data: each layer represents a taxonomic rank. The color indicates the abundance of that taxon in comparison with the total number of reads. Zooming into an specific taxon is possible by clicking on it.

This visualization can be useful to interactively explore the taxonomic composition of the sample. It shows hierarchical data: each layer represents a taxonomic rank. The color indicates the abundance of that taxon in comparison with the total number of reads. Zooming into an specific taxon is possible by clicking on it.

Taxonomy

Barplot of the 9 most abundant taxa at the phylum rank in all the samples. Any remaining taxa have been collapsed under the 'Other' category to facilitate the visualization. The y-axis indicates the relative abundance of each taxon in percentages for each sample.

Barplot of the 9 most abundant taxa at the class rank in all the samples. Any remaining taxa have been collapsed under the 'Other' category to facilitate the visualization. The y-axis indicates the relative abundance of each taxon in percentages for each sample.

Barplot of the 9 most abundant taxa at the order rank in all the samples. Any remaining taxa have been collapsed under the 'Other' category to facilitate the visualization. The y-axis indicates the relative abundance of each taxon in percentages for each sample.

Barplot of the 9 most abundant taxa at the family rank in all the samples. Any remaining taxa have been collapsed under the 'Other' category to facilitate the visualization. The y-axis indicates the relative abundance of each taxon in percentages for each sample.

Barplot of the 9 most abundant taxa at the genus rank in all the samples. Any remaining taxa have been collapsed under the 'Other' category to facilitate the visualization. The y-axis indicates the relative abundance of each taxon in percentages for each sample.

Barplot of the 9 most abundant taxa at the species rank in all the samples. Any remaining taxa have been collapsed under the 'Other' category to facilitate the visualization. The y-axis indicates the relative abundance of each taxon in percentages for each sample.

Abundances

Abundance table for the phylum rank.

Only taxa whose global abundance are above the abundance_threshold parameter will appear in the table.

phylum barcode01 barcode02 barcode03 total superkingdom kingdom tax
Euryarchaeota 149 0 0 149 Archaea Archaea_none Archaea;Archaea_none;Euryarchaeota
Actinomycetota 395 0 0 395 Bacteria Bacteria_none Bacteria;Bacteria_none;Actinomycetota
Bacillota 31011 36717 35795 103523 Bacteria Bacteria_none Bacteria;Bacteria_none;Bacillota
Bacteria_none_none 10 0 0 10 Bacteria Bacteria_none Bacteria;Bacteria_none;Bacteria_none_none
Bacteroidota 17358 29251 39395 86004 Bacteria Bacteria_none Bacteria;Bacteria_none;Bacteroidota
Pseudomonadota 279 0 0 279 Bacteria Bacteria_none Bacteria;Bacteria_none;Pseudomonadota
Spirochaetota 11 0 0 11 Bacteria Bacteria_none Bacteria;Bacteria_none;Spirochaetota
Thermodesulfobacteriota 28 0 0 28 Bacteria Bacteria_none Bacteria;Bacteria_none;Thermodesulfobacteriota
Verrucomicrobiota 831 1565 0 2396 Bacteria Bacteria_none Bacteria;Bacteria_none;Verrucomicrobiota
Chordata 729 1448 15 2192 Eukaryota Metazoa Eukaryota;Metazoa;Chordata
Unknown 4069 3986 96 8151 Unclassified Unknown Unclassified;Unknown;Unknown

Abundance table for the class rank.

Only taxa whose global abundance are above the abundance_threshold parameter will appear in the table.

class barcode01 barcode02 barcode03 total superkingdom kingdom phylum tax
Methanobacteria 149 0 0 149 Archaea Archaea_none Euryarchaeota Archaea;Archaea_none;Euryarchaeota;Methanobacteria
Actinomycetes 211 0 0 211 Bacteria Bacteria_none Actinomycetota Bacteria;Bacteria_none;Actinomycetota;Actinomycetes
Coriobacteriia 184 0 0 184 Bacteria Bacteria_none Actinomycetota Bacteria;Bacteria_none;Actinomycetota;Coriobacteriia
Bacilli 242 0 0 242 Bacteria Bacteria_none Bacillota Bacteria;Bacteria_none;Bacillota;Bacilli
Clostridia 28363 33294 35795 97452 Bacteria Bacteria_none Bacillota Bacteria;Bacteria_none;Bacillota;Clostridia
Erysipelotrichia 831 1161 0 1992 Bacteria Bacteria_none Bacillota Bacteria;Bacteria_none;Bacillota;Erysipelotrichia
Negativicutes 1546 2262 0 3808 Bacteria Bacteria_none Bacillota Bacteria;Bacteria_none;Bacillota;Negativicutes
Tissierellia 29 0 0 29 Bacteria Bacteria_none Bacillota Bacteria;Bacteria_none;Bacillota;Tissierellia
Deltaproteobacteria 10 0 0 10 Bacteria Bacteria_none Bacteria_none_none Bacteria;Bacteria_none;Bacteria_none_none;Deltaproteobacteria
Bacteroidia 17358 29251 39395 86004 Bacteria Bacteria_none Bacteroidota Bacteria;Bacteria_none;Bacteroidota;Bacteroidia
Alphaproteobacteria 42 0 0 42 Bacteria Bacteria_none Pseudomonadota Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria
Betaproteobacteria 97 0 0 97 Bacteria Bacteria_none Pseudomonadota Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria
Gammaproteobacteria 140 0 0 140 Bacteria Bacteria_none Pseudomonadota Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria
Spirochaetia 11 0 0 11 Bacteria Bacteria_none Spirochaetota Bacteria;Bacteria_none;Spirochaetota;Spirochaetia
Desulfovibrionia 28 0 0 28 Bacteria Bacteria_none Thermodesulfobacteriota Bacteria;Bacteria_none;Thermodesulfobacteriota;Desulfovibrionia
Verrucomicrobiia 831 1565 0 2396 Bacteria Bacteria_none Verrucomicrobiota Bacteria;Bacteria_none;Verrucomicrobiota;Verrucomicrobiia
Mammalia 729 1448 15 2192 Eukaryota Metazoa Chordata Eukaryota;Metazoa;Chordata;Mammalia
Unknown 4069 3986 96 8151 Unclassified Unknown Unknown Unclassified;Unknown;Unknown;Unknown

Abundance table for the order rank.

Only taxa whose global abundance are above the abundance_threshold parameter will appear in the table.

order barcode01 barcode02 barcode03 total superkingdom kingdom phylum class tax
Methanobacteriales 149 0 0 149 Archaea Archaea_none Euryarchaeota Methanobacteria Archaea;Archaea_none;Euryarchaeota;Methanobacteria;Methanobacteriales
Bifidobacteriales 211 0 0 211 Bacteria Bacteria_none Actinomycetota Actinomycetes Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Bifidobacteriales
Coriobacteriales 65 0 0 65 Bacteria Bacteria_none Actinomycetota Coriobacteriia Bacteria;Bacteria_none;Actinomycetota;Coriobacteriia;Coriobacteriales
Eggerthellales 119 0 0 119 Bacteria Bacteria_none Actinomycetota Coriobacteriia Bacteria;Bacteria_none;Actinomycetota;Coriobacteriia;Eggerthellales
Bacillales 50 0 0 50 Bacteria Bacteria_none Bacillota Bacilli Bacteria;Bacteria_none;Bacillota;Bacilli;Bacillales
Lactobacillales 192 0 0 192 Bacteria Bacteria_none Bacillota Bacilli Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales
Christensenellales 14 0 0 14 Bacteria Bacteria_none Bacillota Clostridia Bacteria;Bacteria_none;Bacillota;Clostridia;Christensenellales
Eubacteriales 11663 10115 17804 39582 Bacteria Bacteria_none Bacillota Clostridia Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales
Lachnospirales 15971 23136 17991 57098 Bacteria Bacteria_none Bacillota Clostridia Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales
Monoglobales 295 0 0 295 Bacteria Bacteria_none Bacillota Clostridia Bacteria;Bacteria_none;Bacillota;Clostridia;Monoglobales
Peptostreptococcales 420 43 0 463 Bacteria Bacteria_none Bacillota Clostridia Bacteria;Bacteria_none;Bacillota;Clostridia;Peptostreptococcales
Erysipelotrichales 831 1161 0 1992 Bacteria Bacteria_none Bacillota Erysipelotrichia Bacteria;Bacteria_none;Bacillota;Erysipelotrichia;Erysipelotrichales
Acidaminococcales 416 0 0 416 Bacteria Bacteria_none Bacillota Negativicutes Bacteria;Bacteria_none;Bacillota;Negativicutes;Acidaminococcales
Selenomonadales 1118 2262 0 3380 Bacteria Bacteria_none Bacillota Negativicutes Bacteria;Bacteria_none;Bacillota;Negativicutes;Selenomonadales
Veillonellales 12 0 0 12 Bacteria Bacteria_none Bacillota Negativicutes Bacteria;Bacteria_none;Bacillota;Negativicutes;Veillonellales
Tissierellales 29 0 0 29 Bacteria Bacteria_none Bacillota Tissierellia Bacteria;Bacteria_none;Bacillota;Tissierellia;Tissierellales
Deltaproteobacteria_Incertae_sedis 10 0 0 10 Bacteria Bacteria_none Bacteria_none_none Deltaproteobacteria Bacteria;Bacteria_none;Bacteria_none_none;Deltaproteobacteria;Deltaproteobacteria_Incertae_sedis
Bacteroidales 17358 29251 39395 86004 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales
Rhodospirillales 42 0 0 42 Bacteria Bacteria_none Pseudomonadota Alphaproteobacteria Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Rhodospirillales
Burkholderiales 97 0 0 97 Bacteria Bacteria_none Pseudomonadota Betaproteobacteria Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales
Enterobacterales 126 0 0 126 Bacteria Bacteria_none Pseudomonadota Gammaproteobacteria Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Enterobacterales
Legionellales 14 0 0 14 Bacteria Bacteria_none Pseudomonadota Gammaproteobacteria Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Legionellales
Spirochaetales 11 0 0 11 Bacteria Bacteria_none Spirochaetota Spirochaetia Bacteria;Bacteria_none;Spirochaetota;Spirochaetia;Spirochaetales
Desulfovibrionales 28 0 0 28 Bacteria Bacteria_none Thermodesulfobacteriota Desulfovibrionia Bacteria;Bacteria_none;Thermodesulfobacteriota;Desulfovibrionia;Desulfovibrionales
Verrucomicrobiales 831 1565 0 2396 Bacteria Bacteria_none Verrucomicrobiota Verrucomicrobiia Bacteria;Bacteria_none;Verrucomicrobiota;Verrucomicrobiia;Verrucomicrobiales
Primates 729 1448 15 2192 Eukaryota Metazoa Chordata Mammalia Eukaryota;Metazoa;Chordata;Mammalia;Primates
Unknown 4069 3986 96 8151 Unclassified Unknown Unknown Unknown Unclassified;Unknown;Unknown;Unknown;Unknown

Abundance table for the family rank.

Only taxa whose global abundance are above the abundance_threshold parameter will appear in the table.

family barcode01 barcode02 barcode03 total superkingdom kingdom phylum class order tax
Methanobacteriaceae 149 0 0 149 Archaea Archaea_none Euryarchaeota Methanobacteria Methanobacteriales Archaea;Archaea_none;Euryarchaeota;Methanobacteria;Methanobacteriales;Methanobacteriaceae
Bifidobacteriaceae 211 0 0 211 Bacteria Bacteria_none Actinomycetota Actinomycetes Bifidobacteriales Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae
Coriobacteriaceae 65 0 0 65 Bacteria Bacteria_none Actinomycetota Coriobacteriia Coriobacteriales Bacteria;Bacteria_none;Actinomycetota;Coriobacteriia;Coriobacteriales;Coriobacteriaceae
Eggerthellaceae 119 0 0 119 Bacteria Bacteria_none Actinomycetota Coriobacteriia Eggerthellales Bacteria;Bacteria_none;Actinomycetota;Coriobacteriia;Eggerthellales;Eggerthellaceae
Bacillaceae 26 0 0 26 Bacteria Bacteria_none Bacillota Bacilli Bacillales Bacteria;Bacteria_none;Bacillota;Bacilli;Bacillales;Bacillaceae
Paenibacillaceae 24 0 0 24 Bacteria Bacteria_none Bacillota Bacilli Bacillales Bacteria;Bacteria_none;Bacillota;Bacilli;Bacillales;Paenibacillaceae
Enterococcaceae 52 0 0 52 Bacteria Bacteria_none Bacillota Bacilli Lactobacillales Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Enterococcaceae
Lactobacillaceae 33 0 0 33 Bacteria Bacteria_none Bacillota Bacilli Lactobacillales Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae
Streptococcaceae 107 0 0 107 Bacteria Bacteria_none Bacillota Bacilli Lactobacillales Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Streptococcaceae
Christensenellaceae 14 0 0 14 Bacteria Bacteria_none Bacillota Clostridia Christensenellales Bacteria;Bacteria_none;Bacillota;Clostridia;Christensenellales;Christensenellaceae
Acutalibacteraceae 64 0 0 64 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Acutalibacteraceae
Aristaeellaceae 31 0 0 31 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Aristaeellaceae
Butyricicoccaceae 43 0 12 55 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Butyricicoccaceae
Clostridiaceae 403 0 0 403 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Clostridiaceae
Eubacteriaceae 242 11 0 253 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Eubacteriaceae
Eubacteriales_Incertae_sedis 233 0 0 233 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Eubacteriales_Incertae_sedis
Maliibacteriaceae 28 0 0 28 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Maliibacteriaceae
Oscillospiraceae 10619 10104 17792 38515 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae
Lachnospiraceae 15971 23136 17991 57098 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae
Monoglobaceae 295 0 0 295 Bacteria Bacteria_none Bacillota Clostridia Monoglobales Bacteria;Bacteria_none;Bacillota;Clostridia;Monoglobales;Monoglobaceae
Anaerovoracaceae 23 0 0 23 Bacteria Bacteria_none Bacillota Clostridia Peptostreptococcales Bacteria;Bacteria_none;Bacillota;Clostridia;Peptostreptococcales;Anaerovoracaceae
Peptostreptococcaceae 397 43 0 440 Bacteria Bacteria_none Bacillota Clostridia Peptostreptococcales Bacteria;Bacteria_none;Bacillota;Clostridia;Peptostreptococcales;Peptostreptococcaceae
Coprobacillaceae 667 1161 0 1828 Bacteria Bacteria_none Bacillota Erysipelotrichia Erysipelotrichales Bacteria;Bacteria_none;Bacillota;Erysipelotrichia;Erysipelotrichales;Coprobacillaceae
Erysipelotrichaceae 112 0 0 112 Bacteria Bacteria_none Bacillota Erysipelotrichia Erysipelotrichales Bacteria;Bacteria_none;Bacillota;Erysipelotrichia;Erysipelotrichales;Erysipelotrichaceae
Turicibacteraceae 52 0 0 52 Bacteria Bacteria_none Bacillota Erysipelotrichia Erysipelotrichales Bacteria;Bacteria_none;Bacillota;Erysipelotrichia;Erysipelotrichales;Turicibacteraceae
Acidaminococcaceae 416 0 0 416 Bacteria Bacteria_none Bacillota Negativicutes Acidaminococcales Bacteria;Bacteria_none;Bacillota;Negativicutes;Acidaminococcales;Acidaminococcaceae
Selenomonadaceae 1118 2262 0 3380 Bacteria Bacteria_none Bacillota Negativicutes Selenomonadales Bacteria;Bacteria_none;Bacillota;Negativicutes;Selenomonadales;Selenomonadaceae
Veillonellaceae 12 0 0 12 Bacteria Bacteria_none Bacillota Negativicutes Veillonellales Bacteria;Bacteria_none;Bacillota;Negativicutes;Veillonellales;Veillonellaceae
Peptoniphilaceae 29 0 0 29 Bacteria Bacteria_none Bacillota Tissierellia Tissierellales Bacteria;Bacteria_none;Bacillota;Tissierellia;Tissierellales;Peptoniphilaceae
Deltaproteobacteria_Incertae_sedis 10 0 0 10 Bacteria Bacteria_none Bacteria_none_none Deltaproteobacteria Deltaproteobacteria_Incertae_sedis Bacteria;Bacteria_none;Bacteria_none_none;Deltaproteobacteria;Deltaproteobacteria_Incertae_sedis;Deltaproteobacteria_Incertae_sedis
Bacteroidaceae 15259 27203 39358 81820 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae
Odoribacteraceae 401 0 0 401 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Odoribacteraceae
Rikenellaceae 352 14 37 403 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Rikenellaceae
Tannerellaceae 1346 2034 0 3380 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Tannerellaceae
Acetobacteraceae 42 0 0 42 Bacteria Bacteria_none Pseudomonadota Alphaproteobacteria Rhodospirillales Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Rhodospirillales;Acetobacteraceae
Sutterellaceae 97 0 0 97 Bacteria Bacteria_none Pseudomonadota Betaproteobacteria Burkholderiales Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales;Sutterellaceae
Enterobacteriaceae 126 0 0 126 Bacteria Bacteria_none Pseudomonadota Gammaproteobacteria Enterobacterales Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae
Legionellaceae 14 0 0 14 Bacteria Bacteria_none Pseudomonadota Gammaproteobacteria Legionellales Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Legionellales;Legionellaceae
Treponemataceae 11 0 0 11 Bacteria Bacteria_none Spirochaetota Spirochaetia Spirochaetales Bacteria;Bacteria_none;Spirochaetota;Spirochaetia;Spirochaetales;Treponemataceae
Desulfovibrionaceae 28 0 0 28 Bacteria Bacteria_none Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Bacteria;Bacteria_none;Thermodesulfobacteriota;Desulfovibrionia;Desulfovibrionales;Desulfovibrionaceae
Akkermansiaceae 831 1565 0 2396 Bacteria Bacteria_none Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Bacteria;Bacteria_none;Verrucomicrobiota;Verrucomicrobiia;Verrucomicrobiales;Akkermansiaceae
Hominidae 729 1448 15 2192 Eukaryota Metazoa Chordata Mammalia Primates Eukaryota;Metazoa;Chordata;Mammalia;Primates;Hominidae
Unknown 4069 3986 96 8151 Unclassified Unknown Unknown Unknown Unknown Unclassified;Unknown;Unknown;Unknown;Unknown;Unknown

Abundance table for the genus rank.

Only taxa whose global abundance are above the abundance_threshold parameter will appear in the table.

genus barcode01 barcode02 barcode03 total superkingdom kingdom phylum class order family tax
Methanobrevibacter 149 0 0 149 Archaea Archaea_none Euryarchaeota Methanobacteria Methanobacteriales Methanobacteriaceae Archaea;Archaea_none;Euryarchaeota;Methanobacteria;Methanobacteriales;Methanobacteriaceae;Methanobrevibacter
Bifidobacterium 211 0 0 211 Bacteria Bacteria_none Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium
Collinsella 65 0 0 65 Bacteria Bacteria_none Actinomycetota Coriobacteriia Coriobacteriales Coriobacteriaceae Bacteria;Bacteria_none;Actinomycetota;Coriobacteriia;Coriobacteriales;Coriobacteriaceae;Collinsella
Adlercreutzia 98 0 0 98 Bacteria Bacteria_none Actinomycetota Coriobacteriia Eggerthellales Eggerthellaceae Bacteria;Bacteria_none;Actinomycetota;Coriobacteriia;Eggerthellales;Eggerthellaceae;Adlercreutzia
Eggerthella 21 0 0 21 Bacteria Bacteria_none Actinomycetota Coriobacteriia Eggerthellales Eggerthellaceae Bacteria;Bacteria_none;Actinomycetota;Coriobacteriia;Eggerthellales;Eggerthellaceae;Eggerthella
Bacillus 26 0 0 26 Bacteria Bacteria_none Bacillota Bacilli Bacillales Bacillaceae Bacteria;Bacteria_none;Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus
Paenibacillus 24 0 0 24 Bacteria Bacteria_none Bacillota Bacilli Bacillales Paenibacillaceae Bacteria;Bacteria_none;Bacillota;Bacilli;Bacillales;Paenibacillaceae;Paenibacillus
Enterococcus 52 0 0 52 Bacteria Bacteria_none Bacillota Bacilli Lactobacillales Enterococcaceae Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus
Lactiplantibacillus 23 0 0 23 Bacteria Bacteria_none Bacillota Bacilli Lactobacillales Lactobacillaceae Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus
Ligilactobacillus 10 0 0 10 Bacteria Bacteria_none Bacillota Bacilli Lactobacillales Lactobacillaceae Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Ligilactobacillus
Lactococcus 53 0 0 53 Bacteria Bacteria_none Bacillota Bacilli Lactobacillales Streptococcaceae Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus
Streptococcus 54 0 0 54 Bacteria Bacteria_none Bacillota Bacilli Lactobacillales Streptococcaceae Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus
Christensenella 14 0 0 14 Bacteria Bacteria_none Bacillota Clostridia Christensenellales Christensenellaceae Bacteria;Bacteria_none;Bacillota;Clostridia;Christensenellales;Christensenellaceae;Christensenella
Acutalibacter 33 0 0 33 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Acutalibacteraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Acutalibacteraceae;Acutalibacter
Caproicibacter 31 0 0 31 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Acutalibacteraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Acutalibacteraceae;Caproicibacter
Aristaeella 31 0 0 31 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Aristaeellaceae Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Aristaeellaceae;Aristaeella
Agathobaculum 14 0 0 14 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Butyricicoccaceae Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Butyricicoccaceae;Agathobaculum
Intestinibacillus 29 0 12 41 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Butyricicoccaceae Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Butyricicoccaceae;Intestinibacillus
Clostridium 403 0 0 403 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Clostridiaceae Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Clostridium
Eubacterium 242 11 0 253 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Eubacteriaceae Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Eubacteriaceae;Eubacterium
Flintibacter 70 0 0 70 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Eubacteriales_Incertae_sedis Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Eubacteriales_Incertae_sedis;Flintibacter
Intestinimonas 124 0 0 124 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Eubacteriales_Incertae_sedis Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Eubacteriales_Incertae_sedis;Intestinimonas
Massilistercora 39 0 0 39 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Eubacteriales_Incertae_sedis Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Eubacteriales_Incertae_sedis;Massilistercora
Maliibacterium 28 0 0 28 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Maliibacteriaceae Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Maliibacteriaceae;Maliibacterium
Anaerotruncus 150 0 0 150 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Anaerotruncus
Caproicibacterium 31 0 0 31 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Caproicibacterium
Dysosmobacter 161 0 0 161 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Dysosmobacter
Ethanoligenens 13 0 0 13 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Ethanoligenens
Faecalibacterium 5848 6956 10049 22853 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Faecalibacterium
Flavonifractor 444 0 0 444 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Flavonifractor
Lawsonibacter 189 0 0 189 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Lawsonibacter
Oscillibacter 248 30 0 278 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Oscillibacter
Paludihabitans 42 0 0 42 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Paludihabitans
Pusillibacter 138 0 0 138 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Pusillibacter
Ruminococcus 1923 3062 7634 12619 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Ruminococcus
Ruthenibacterium 157 0 0 157 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Ruthenibacterium
Solibaculum 38 0 0 38 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Solibaculum
Subdoligranulum 501 56 109 666 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Subdoligranulum
Thermocaproicibacter 19 0 0 19 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Thermocaproicibacter
Vescimonas 717 0 0 717 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Vescimonas
Agathobacter 1210 2165 72 3447 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Agathobacter
Anaerobutyricum 1684 3159 7877 12720 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Anaerobutyricum
Anaerocolumna 130 0 0 130 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Anaerocolumna
Anaeromicropila 22 0 0 22 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Anaeromicropila
Anaerostipes 1087 1976 43 3106 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Anaerostipes
Blautia 1798 1771 140 3709 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Blautia
Butyrivibrio 206 11 0 217 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Butyrivibrio
Chordicoccus 24 0 0 24 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Chordicoccus
Claveliimonas 52 0 0 52 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Claveliimonas
Coprococcus 1217 1316 0 2533 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Coprococcus
Dorea 1655 2386 0 4041 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Dorea
Enterocloster 286 10 10 306 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Enterocloster
Herbinix 11 0 0 11 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Herbinix
Hungatella 57 0 0 57 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Hungatella
Kineothrix 44 12 0 56 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Kineothrix
Lachnoanaerobaculum 22 0 0 22 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Lachnoanaerobaculum
Lachnoclostridium 413 80 29 522 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Lachnoclostridium
Lachnospira 1965 3879 9751 15595 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Lachnospira
Lacrimispora 65 0 0 65 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Lacrimispora
Marvinbryantia 14 0 0 14 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Marvinbryantia
Mediterraneibacter 813 1477 20 2310 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Mediterraneibacter
Novisyntrophococcus 54 0 0 54 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Novisyntrophococcus
Pseudobutyrivibrio 37 0 0 37 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Pseudobutyrivibrio
Qiania 51 0 0 51 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Qiania
Roseburia 2126 3441 49 5616 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Roseburia
Sellimonas 66 0 0 66 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Sellimonas
Simiaoa 718 1453 0 2171 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Simiaoa
Stomatobaculum 15 0 0 15 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Stomatobaculum
Wansuia 83 0 0 83 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Wansuia
Wujia 46 0 0 46 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Wujia
Monoglobus 295 0 0 295 Bacteria Bacteria_none Bacillota Clostridia Monoglobales Monoglobaceae Bacteria;Bacteria_none;Bacillota;Clostridia;Monoglobales;Monoglobaceae;Monoglobus
Aminipila 11 0 0 11 Bacteria Bacteria_none Bacillota Clostridia Peptostreptococcales Anaerovoracaceae Bacteria;Bacteria_none;Bacillota;Clostridia;Peptostreptococcales;Anaerovoracaceae;Aminipila
Emergencia 12 0 0 12 Bacteria Bacteria_none Bacillota Clostridia Peptostreptococcales Anaerovoracaceae Bacteria;Bacteria_none;Bacillota;Clostridia;Peptostreptococcales;Anaerovoracaceae;Emergencia
Clostridioides 186 33 0 219 Bacteria Bacteria_none Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Bacteria;Bacteria_none;Bacillota;Clostridia;Peptostreptococcales;Peptostreptococcaceae;Clostridioides
Intestinibacter 39 10 0 49 Bacteria Bacteria_none Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Bacteria;Bacteria_none;Bacillota;Clostridia;Peptostreptococcales;Peptostreptococcaceae;Intestinibacter
Paraclostridium 11 0 0 11 Bacteria Bacteria_none Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Bacteria;Bacteria_none;Bacillota;Clostridia;Peptostreptococcales;Peptostreptococcaceae;Paraclostridium
Romboutsia 161 0 0 161 Bacteria Bacteria_none Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Bacteria;Bacteria_none;Bacillota;Clostridia;Peptostreptococcales;Peptostreptococcaceae;Romboutsia
Faecalibacillus 635 1161 0 1796 Bacteria Bacteria_none Bacillota Erysipelotrichia Erysipelotrichales Coprobacillaceae Bacteria;Bacteria_none;Bacillota;Erysipelotrichia;Erysipelotrichales;Coprobacillaceae;Faecalibacillus
Thomasclavelia 32 0 0 32 Bacteria Bacteria_none Bacillota Erysipelotrichia Erysipelotrichales Coprobacillaceae Bacteria;Bacteria_none;Bacillota;Erysipelotrichia;Erysipelotrichales;Coprobacillaceae;Thomasclavelia
Amedibacterium 16 0 0 16 Bacteria Bacteria_none Bacillota Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Bacteria;Bacteria_none;Bacillota;Erysipelotrichia;Erysipelotrichales;Erysipelotrichaceae;Amedibacterium
Erysipelotrichaceae_Incertae_sedis 96 0 0 96 Bacteria Bacteria_none Bacillota Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Bacteria;Bacteria_none;Bacillota;Erysipelotrichia;Erysipelotrichales;Erysipelotrichaceae;Erysipelotrichaceae_Incertae_sedis
Turicibacter 52 0 0 52 Bacteria Bacteria_none Bacillota Erysipelotrichia Erysipelotrichales Turicibacteraceae Bacteria;Bacteria_none;Bacillota;Erysipelotrichia;Erysipelotrichales;Turicibacteraceae;Turicibacter
Phascolarctobacterium 416 0 0 416 Bacteria Bacteria_none Bacillota Negativicutes Acidaminococcales Acidaminococcaceae Bacteria;Bacteria_none;Bacillota;Negativicutes;Acidaminococcales;Acidaminococcaceae;Phascolarctobacterium
Megamonas 1104 2262 0 3366 Bacteria Bacteria_none Bacillota Negativicutes Selenomonadales Selenomonadaceae Bacteria;Bacteria_none;Bacillota;Negativicutes;Selenomonadales;Selenomonadaceae;Megamonas
Selenomonas 14 0 0 14 Bacteria Bacteria_none Bacillota Negativicutes Selenomonadales Selenomonadaceae Bacteria;Bacteria_none;Bacillota;Negativicutes;Selenomonadales;Selenomonadaceae;Selenomonas
Dialister 12 0 0 12 Bacteria Bacteria_none Bacillota Negativicutes Veillonellales Veillonellaceae Bacteria;Bacteria_none;Bacillota;Negativicutes;Veillonellales;Veillonellaceae;Dialister
Parvimonas 13 0 0 13 Bacteria Bacteria_none Bacillota Tissierellia Tissierellales Peptoniphilaceae Bacteria;Bacteria_none;Bacillota;Tissierellia;Tissierellales;Peptoniphilaceae;Parvimonas
Peptoniphilus 16 0 0 16 Bacteria Bacteria_none Bacillota Tissierellia Tissierellales Peptoniphilaceae Bacteria;Bacteria_none;Bacillota;Tissierellia;Tissierellales;Peptoniphilaceae;Peptoniphilus
Dissulfurimicrobium 10 0 0 10 Bacteria Bacteria_none Bacteria_none_none Deltaproteobacteria Deltaproteobacteria_Incertae_sedis Deltaproteobacteria_Incertae_sedis Bacteria;Bacteria_none;Bacteria_none_none;Deltaproteobacteria;Deltaproteobacteria_Incertae_sedis;Deltaproteobacteria_Incertae_sedis;Dissulfurimicrobium
Bacteroides 7447 11306 103 18856 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides
Phocaeicola 7812 15897 39255 62964 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Phocaeicola
Butyricimonas 137 0 0 137 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Odoribacteraceae Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Odoribacteraceae;Butyricimonas
Odoribacter 264 0 0 264 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Odoribacteraceae Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Odoribacteraceae;Odoribacter
Alistipes 352 14 37 403 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Rikenellaceae;Alistipes
Parabacteroides 1346 2034 0 3380 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Tannerellaceae;Parabacteroides
Komagataeibacter 42 0 0 42 Bacteria Bacteria_none Pseudomonadota Alphaproteobacteria Rhodospirillales Acetobacteraceae Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Rhodospirillales;Acetobacteraceae;Komagataeibacter
Sutterella 79 0 0 79 Bacteria Bacteria_none Pseudomonadota Betaproteobacteria Burkholderiales Sutterellaceae Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales;Sutterellaceae;Sutterella
Turicimonas 18 0 0 18 Bacteria Bacteria_none Pseudomonadota Betaproteobacteria Burkholderiales Sutterellaceae Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales;Sutterellaceae;Turicimonas
Escherichia 93 0 0 93 Bacteria Bacteria_none Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Escherichia
Klebsiella 33 0 0 33 Bacteria Bacteria_none Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella
Legionella 14 0 0 14 Bacteria Bacteria_none Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Legionellales;Legionellaceae;Legionella
Treponema 11 0 0 11 Bacteria Bacteria_none Spirochaetota Spirochaetia Spirochaetales Treponemataceae Bacteria;Bacteria_none;Spirochaetota;Spirochaetia;Spirochaetales;Treponemataceae;Treponema
Desulfovibrio 28 0 0 28 Bacteria Bacteria_none Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Bacteria;Bacteria_none;Thermodesulfobacteriota;Desulfovibrionia;Desulfovibrionales;Desulfovibrionaceae;Desulfovibrio
Akkermansia 831 1565 0 2396 Bacteria Bacteria_none Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Bacteria;Bacteria_none;Verrucomicrobiota;Verrucomicrobiia;Verrucomicrobiales;Akkermansiaceae;Akkermansia
Homo 729 1448 15 2192 Eukaryota Metazoa Chordata Mammalia Primates Hominidae Eukaryota;Metazoa;Chordata;Mammalia;Primates;Hominidae;Homo
Unknown 4069 3986 96 8151 Unclassified Unknown Unknown Unknown Unknown Unknown Unclassified;Unknown;Unknown;Unknown;Unknown;Unknown;Unknown

Abundance table for the species rank.

Only taxa whose global abundance are above the abundance_threshold parameter will appear in the table.

species barcode01 barcode02 barcode03 total superkingdom kingdom phylum class order family genus tax
Methanobrevibacter smithii 149 0 0 149 Archaea Archaea_none Euryarchaeota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Archaea;Archaea_none;Euryarchaeota;Methanobacteria;Methanobacteriales;Methanobacteriaceae;Methanobrevibacter;Methanobrevibacter smithii
Bifidobacterium adolescentis 12 0 0 12 Bacteria Bacteria_none Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium;Bifidobacterium adolescentis
Bifidobacterium bifidum 63 0 0 63 Bacteria Bacteria_none Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium;Bifidobacterium bifidum
Bifidobacterium longum 32 0 0 32 Bacteria Bacteria_none Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium;Bifidobacterium longum
Bifidobacterium pseudocatenulatum 104 0 0 104 Bacteria Bacteria_none Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium;Bifidobacterium pseudocatenulatum
Collinsella aerofaciens 65 0 0 65 Bacteria Bacteria_none Actinomycetota Coriobacteriia Coriobacteriales Coriobacteriaceae Collinsella Bacteria;Bacteria_none;Actinomycetota;Coriobacteriia;Coriobacteriales;Coriobacteriaceae;Collinsella;Collinsella aerofaciens
Adlercreutzia hattorii 98 0 0 98 Bacteria Bacteria_none Actinomycetota Coriobacteriia Eggerthellales Eggerthellaceae Adlercreutzia Bacteria;Bacteria_none;Actinomycetota;Coriobacteriia;Eggerthellales;Eggerthellaceae;Adlercreutzia;Adlercreutzia hattorii
Eggerthella lenta 21 0 0 21 Bacteria Bacteria_none Actinomycetota Coriobacteriia Eggerthellales Eggerthellaceae Eggerthella Bacteria;Bacteria_none;Actinomycetota;Coriobacteriia;Eggerthellales;Eggerthellaceae;Eggerthella;Eggerthella lenta
Bacillus sp. DX3.1 26 0 0 26 Bacteria Bacteria_none Bacillota Bacilli Bacillales Bacillaceae Bacillus Bacteria;Bacteria_none;Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus;Bacillus sp. DX3.1
Paenibacillus sp. FSL R7-0273 24 0 0 24 Bacteria Bacteria_none Bacillota Bacilli Bacillales Paenibacillaceae Paenibacillus Bacteria;Bacteria_none;Bacillota;Bacilli;Bacillales;Paenibacillaceae;Paenibacillus;Paenibacillus sp. FSL R7-0273
Enterococcus faecium 52 0 0 52 Bacteria Bacteria_none Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus;Enterococcus faecium
Lactiplantibacillus pentosus 23 0 0 23 Bacteria Bacteria_none Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus;Lactiplantibacillus pentosus
Ligilactobacillus murinus 10 0 0 10 Bacteria Bacteria_none Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Ligilactobacillus;Ligilactobacillus murinus
Lactococcus lactis 53 0 0 53 Bacteria Bacteria_none Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus;Lactococcus lactis
Streptococcus salivarius 34 0 0 34 Bacteria Bacteria_none Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus salivarius
Streptococcus thermophilus 20 0 0 20 Bacteria Bacteria_none Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus thermophilus
Christensenella minuta 14 0 0 14 Bacteria Bacteria_none Bacillota Clostridia Christensenellales Christensenellaceae Christensenella Bacteria;Bacteria_none;Bacillota;Clostridia;Christensenellales;Christensenellaceae;Christensenella;Christensenella minuta
Acutalibacter muris 33 0 0 33 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Acutalibacteraceae Acutalibacter Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Acutalibacteraceae;Acutalibacter;Acutalibacter muris
Caproicibacter fermentans 31 0 0 31 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Acutalibacteraceae Caproicibacter Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Acutalibacteraceae;Caproicibacter;Caproicibacter fermentans
Aristaeella hokkaidonensis 19 0 0 19 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Aristaeellaceae Aristaeella Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Aristaeellaceae;Aristaeella;Aristaeella hokkaidonensis
Aristaeella lactis 12 0 0 12 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Aristaeellaceae Aristaeella Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Aristaeellaceae;Aristaeella;Aristaeella lactis
Agathobaculum sp. NTUH-O15-33 14 0 0 14 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Butyricicoccaceae Agathobaculum Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Butyricicoccaceae;Agathobaculum;Agathobaculum sp. NTUH-O15-33
Intestinibacillus sp. NTUH-41-i26 29 0 12 41 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Butyricicoccaceae Intestinibacillus Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Butyricicoccaceae;Intestinibacillus;Intestinibacillus sp. NTUH-41-i26
Clostridium baratii 12 0 0 12 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Clostridium;Clostridium baratii
Clostridium bornimense 24 0 0 24 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Clostridium;Clostridium bornimense
Clostridium botulinum 18 0 0 18 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Clostridium;Clostridium botulinum
Clostridium cadaveris 26 0 0 26 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Clostridium;Clostridium cadaveris
Clostridium chauvoei 12 0 0 12 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Clostridium;Clostridium chauvoei
Clostridium estertheticum 17 0 0 17 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Clostridium;Clostridium estertheticum
Clostridium gasigenes 11 0 0 11 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Clostridium;Clostridium gasigenes
Clostridium intestinale 11 0 0 11 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Clostridium;Clostridium intestinale
Clostridium isatidis 15 0 0 15 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Clostridium;Clostridium isatidis
Clostridium perfringens 62 0 0 62 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Clostridium;Clostridium perfringens
Clostridium septicum 10 0 0 10 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Clostridium;Clostridium septicum
Clostridium sp. BJN0001 15 0 0 15 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Clostridium;Clostridium sp. BJN0001
Clostridium sp. C1 14 0 0 14 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Clostridium;Clostridium sp. C1
Clostridium sp. M62/1 127 0 0 127 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Clostridium;Clostridium sp. M62/1
Clostridium sp. SY8519 29 0 0 29 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Clostridium;Clostridium sp. SY8519
Eubacterium callanderi 37 11 0 48 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacterium Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Eubacteriaceae;Eubacterium;Eubacterium callanderi
Eubacterium maltosivorans 21 0 0 21 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacterium Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Eubacteriaceae;Eubacterium;Eubacterium maltosivorans
Eubacterium sp. MSJ-33 37 0 0 37 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacterium Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Eubacteriaceae;Eubacterium;Eubacterium sp. MSJ-33
Eubacterium ventriosum 147 0 0 147 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacterium Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Eubacteriaceae;Eubacterium;Eubacterium ventriosum
Flintibacter sp. KGMB00164 70 0 0 70 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Eubacteriales_Incertae_sedis Flintibacter Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Eubacteriales_Incertae_sedis;Flintibacter;Flintibacter sp. KGMB00164
Intestinimonas butyriciproducens 124 0 0 124 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Eubacteriales_Incertae_sedis Intestinimonas Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Eubacteriales_Incertae_sedis;Intestinimonas;Intestinimonas butyriciproducens
Massilistercora timonensis 39 0 0 39 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Eubacteriales_Incertae_sedis Massilistercora Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Eubacteriales_Incertae_sedis;Massilistercora;Massilistercora timonensis
Maliibacterium massiliense 28 0 0 28 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Maliibacteriaceae Maliibacterium Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Maliibacteriaceae;Maliibacterium;Maliibacterium massiliense
Anaerotruncus colihominis 150 0 0 150 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Anaerotruncus Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Anaerotruncus;Anaerotruncus colihominis
Caproicibacterium lactatifermentans 15 0 0 15 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Caproicibacterium Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Caproicibacterium;Caproicibacterium lactatifermentans
Caproicibacterium sp. BJN0003 16 0 0 16 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Caproicibacterium Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Caproicibacterium;Caproicibacterium sp. BJN0003
Dysosmobacter welbionis 161 0 0 161 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Dysosmobacter Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Dysosmobacter;Dysosmobacter welbionis
Ethanoligenens harbinense 13 0 0 13 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Ethanoligenens Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Ethanoligenens;Ethanoligenens harbinense
Faecalibacterium duncaniae 559 1080 101 1740 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Faecalibacterium;Faecalibacterium duncaniae
Faecalibacterium prausnitzii 1751 3315 8262 13328 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Faecalibacterium;Faecalibacterium prausnitzii
Faecalibacterium sp. HTF-F 930 1875 143 2948 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Faecalibacterium;Faecalibacterium sp. HTF-F
Faecalibacterium sp. I2-3-92 349 30 48 427 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Faecalibacterium;Faecalibacterium sp. I2-3-92
Faecalibacterium sp. I3-3-33 478 31 63 572 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Faecalibacterium;Faecalibacterium sp. I3-3-33
Faecalibacterium sp. I3-3-89 373 27 77 477 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Faecalibacterium;Faecalibacterium sp. I3-3-89
Faecalibacterium sp. I4-1-79 344 24 43 411 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Faecalibacterium;Faecalibacterium sp. I4-1-79
Faecalibacterium sp. I4-3-84 397 155 392 944 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Faecalibacterium;Faecalibacterium sp. I4-3-84
Faecalibacterium sp. IP-1-18 153 0 15 168 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Faecalibacterium;Faecalibacterium sp. IP-1-18
Faecalibacterium sp. IP-3-29 216 19 42 277 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Faecalibacterium;Faecalibacterium sp. IP-3-29
Faecalibacterium taiwanense 298 400 863 1561 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Faecalibacterium;Faecalibacterium taiwanense
Flavonifractor plautii 444 0 0 444 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Flavonifractor Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Flavonifractor;Flavonifractor plautii
Lawsonibacter asaccharolyticus 189 0 0 189 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Lawsonibacter Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Lawsonibacter;Lawsonibacter asaccharolyticus
Oscillibacter hominis 131 0 0 131 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Oscillibacter Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Oscillibacter;Oscillibacter hominis
Oscillibacter sp. PEA192 117 30 0 147 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Oscillibacter Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Oscillibacter;Oscillibacter sp. PEA192
Paludicola sp. MB14-C6 42 0 0 42 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Paludihabitans Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Paludihabitans;Paludicola sp. MB14-C6
Pusillibacter faecalis 138 0 0 138 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Pusillibacter Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Pusillibacter;Pusillibacter faecalis
Ruminococcus albus 0 13 22 35 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Ruminococcus;Ruminococcus albus
Ruminococcus bicirculans (ex Wegman et al. 2014) 1528 3038 7612 12178 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Ruminococcus;Ruminococcus bicirculans (ex Wegman et al. 2014)
Ruminococcus bovis 55 0 0 55 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Ruminococcus;Ruminococcus bovis
Ruminococcus champanellensis 96 0 0 96 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Ruminococcus;Ruminococcus champanellensis
Ruminococcus gauvreauii 24 0 0 24 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Ruminococcus;Ruminococcus gauvreauii
Ruminococcus sp. SR1/5 220 11 0 231 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Ruminococcus;Ruminococcus sp. SR1/5
Ruthenibacterium lactatiformans 157 0 0 157 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Ruthenibacterium Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Ruthenibacterium;Ruthenibacterium lactatiformans
Solibaculum mannosilyticum 38 0 0 38 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Solibaculum Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Solibaculum;Solibaculum mannosilyticum
Subdoligranulum variabile 349 0 16 365 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Subdoligranulum Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Subdoligranulum;Subdoligranulum variabile
Subdoligranulum_uncultured 152 56 93 301 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Subdoligranulum Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Subdoligranulum;Subdoligranulum_uncultured
Thermocaproicibacter melissae 19 0 0 19 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Thermocaproicibacter Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Thermocaproicibacter;Thermocaproicibacter melissae
Vescimonas coprocola 390 0 0 390 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Vescimonas Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Vescimonas;Vescimonas coprocola
Vescimonas fastidiosa 327 0 0 327 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Vescimonas Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Vescimonas;Vescimonas fastidiosa
Agathobacter rectalis 1210 2165 72 3447 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Agathobacter Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Agathobacter;Agathobacter rectalis
Anaerobutyricum hallii 1684 3159 7877 12720 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Anaerobutyricum Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Anaerobutyricum;Anaerobutyricum hallii
Anaerocolumna cellulosilytica 24 0 0 24 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Anaerocolumna Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Anaerocolumna;Anaerocolumna cellulosilytica
Anaerocolumna chitinilytica 41 0 0 41 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Anaerocolumna Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Anaerocolumna;Anaerocolumna chitinilytica
Anaerocolumna sedimenticola 38 0 0 38 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Anaerocolumna Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Anaerocolumna;Anaerocolumna sedimenticola
Anaerocolumna sp. AGMB13025 15 0 0 15 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Anaerocolumna Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Anaerocolumna;Anaerocolumna sp. AGMB13025
Anaerocolumna sp. MB42-C2 12 0 0 12 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Anaerocolumna Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Anaerocolumna;Anaerocolumna sp. MB42-C2
Anaeromicropila herbilytica 22 0 0 22 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Anaeromicropila Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Anaeromicropila;Anaeromicropila herbilytica
Anaerostipes caccae 17 0 0 17 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Anaerostipes Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Anaerostipes;Anaerostipes caccae
Anaerostipes hadrus 1036 1976 43 3055 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Anaerostipes Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Anaerostipes;Anaerostipes hadrus
Anaerostipes rhamnosivorans 34 0 0 34 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Anaerostipes Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Anaerostipes;Anaerostipes rhamnosivorans
Blautia argi 294 12 0 306 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Blautia;Blautia argi
Blautia coccoides 24 27 0 51 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Blautia;Blautia coccoides
Blautia hydrogenotrophica 46 23 14 83 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Blautia;Blautia hydrogenotrophica
Blautia liquoris 31 0 0 31 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Blautia;Blautia liquoris
Blautia luti 226 223 106 555 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Blautia;Blautia luti
Blautia obeum 107 79 20 206 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Blautia;Blautia obeum
Blautia parvula 89 0 0 89 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Blautia;Blautia parvula
Blautia producta 107 0 0 107 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Blautia;Blautia producta
Blautia pseudococcoides 84 0 0 84 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Blautia;Blautia pseudococcoides
Blautia sp. SC05B48 763 1383 0 2146 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Blautia;Blautia sp. SC05B48
Blautia wexlerae 27 24 0 51 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Blautia;Blautia wexlerae
Butyrivibrio crossotus 123 0 0 123 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Butyrivibrio Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Butyrivibrio;Butyrivibrio crossotus
Butyrivibrio fibrisolvens 54 11 0 65 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Butyrivibrio Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Butyrivibrio;Butyrivibrio fibrisolvens
Butyrivibrio hungatei 29 0 0 29 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Butyrivibrio Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Butyrivibrio;Butyrivibrio hungatei
Chordicoccus furentiruminis 24 0 0 24 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Chordicoccus Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Chordicoccus;Chordicoccus furentiruminis
Claveliimonas bilis 52 0 0 52 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Claveliimonas Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Claveliimonas;Claveliimonas bilis
Coprococcus catus 280 18 0 298 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Coprococcus Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Coprococcus;Coprococcus catus
Coprococcus comes 686 1298 0 1984 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Coprococcus Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Coprococcus;Coprococcus comes
Coprococcus eutactus 163 0 0 163 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Coprococcus Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Coprococcus;Coprococcus eutactus
Coprococcus sp. ART55/1 88 0 0 88 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Coprococcus Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Coprococcus;Coprococcus sp. ART55/1
Dorea formicigenerans 417 12 0 429 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Dorea Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Dorea;Dorea formicigenerans
Dorea longicatena 1238 2374 0 3612 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Dorea Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Dorea;Dorea longicatena
Enterocloster asparagiformis 18 0 10 28 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Enterocloster Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Enterocloster;Enterocloster asparagiformis
Enterocloster bolteae 187 10 0 197 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Enterocloster Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Enterocloster;Enterocloster bolteae
Enterocloster clostridioformis 81 0 0 81 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Enterocloster Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Enterocloster;Enterocloster clostridioformis
Herbinix luporum 11 0 0 11 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Herbinix Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Herbinix;Herbinix luporum
Hungatella hathewayi 57 0 0 57 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Hungatella Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Hungatella;Hungatella hathewayi
Kineothrix sp. IPX-CK 14 12 0 26 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Kineothrix Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Kineothrix;Kineothrix sp. IPX-CK
Kineothrix sp. MB12-C1 30 0 0 30 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Kineothrix Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Kineothrix;Kineothrix sp. MB12-C1
Lachnoanaerobaculum gingivalis 22 0 0 22 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnoanaerobaculum Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Lachnoanaerobaculum;Lachnoanaerobaculum gingivalis
Lachnoclostridium phocaeense 77 0 0 77 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnoclostridium Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Lachnoclostridium;Lachnoclostridium phocaeense
[Clostridium] hylemonae 66 0 0 66 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnoclostridium Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Lachnoclostridium;[Clostridium] hylemonae
[Clostridium] scindens 270 80 29 379 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnoclostridium Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Lachnoclostridium;[Clostridium] scindens
Lachnospira eligens 1965 3879 9751 15595 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnospira Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Lachnospira;Lachnospira eligens
Lacrimispora saccharolytica 36 0 0 36 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Lacrimispora Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Lacrimispora;Lacrimispora saccharolytica
Lacrimispora xylanolytica 29 0 0 29 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Lacrimispora Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Lacrimispora;Lacrimispora xylanolytica
Marvinbryantia formatexigens 14 0 0 14 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Marvinbryantia Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Marvinbryantia;Marvinbryantia formatexigens
Mediterraneibacter gnavus 715 1378 0 2093 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Mediterraneibacter Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Mediterraneibacter;Mediterraneibacter gnavus
[Ruminococcus] lactaris 0 13 0 13 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Mediterraneibacter Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Mediterraneibacter;[Ruminococcus] lactaris
[Ruminococcus] torques 98 86 20 204 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Mediterraneibacter Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Mediterraneibacter;[Ruminococcus] torques
Novisyntrophococcus fermenticellae 54 0 0 54 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Novisyntrophococcus Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Novisyntrophococcus;Novisyntrophococcus fermenticellae
Pseudobutyrivibrio xylanivorans 37 0 0 37 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Pseudobutyrivibrio Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Pseudobutyrivibrio;Pseudobutyrivibrio xylanivorans
Qiania dongpingensis 51 0 0 51 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Qiania Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Qiania;Qiania dongpingensis
Roseburia hominis 1007 1853 0 2860 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Roseburia Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Roseburia;Roseburia hominis
Roseburia intestinalis 703 1378 0 2081 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Roseburia Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Roseburia;Roseburia intestinalis
Roseburia rectibacter 243 26 0 269 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Roseburia Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Roseburia;Roseburia rectibacter
Roseburia sp. 499 70 75 16 161 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Roseburia Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Roseburia;Roseburia sp. 499
Roseburia sp. 831b 103 109 33 245 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Roseburia Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Roseburia;Roseburia sp. 831b
Sellimonas intestinalis 66 0 0 66 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Sellimonas Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Sellimonas;Sellimonas intestinalis
Simiaoa sunii 718 1453 0 2171 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Simiaoa Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Simiaoa;Simiaoa sunii
Stomatobaculum sp. F0698 15 0 0 15 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Stomatobaculum Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Stomatobaculum;Stomatobaculum sp. F0698
Wansuia hejianensis 83 0 0 83 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Wansuia Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Wansuia;Wansuia hejianensis
Wujia chipingensis 46 0 0 46 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Wujia Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Wujia;Wujia chipingensis
Monoglobus pectinilyticus 295 0 0 295 Bacteria Bacteria_none Bacillota Clostridia Monoglobales Monoglobaceae Monoglobus Bacteria;Bacteria_none;Bacillota;Clostridia;Monoglobales;Monoglobaceae;Monoglobus;Monoglobus pectinilyticus
Aminipila luticellarii 11 0 0 11 Bacteria Bacteria_none Bacillota Clostridia Peptostreptococcales Anaerovoracaceae Aminipila Bacteria;Bacteria_none;Bacillota;Clostridia;Peptostreptococcales;Anaerovoracaceae;Aminipila;Aminipila luticellarii
Emergencia timonensis 12 0 0 12 Bacteria Bacteria_none Bacillota Clostridia Peptostreptococcales Anaerovoracaceae Emergencia Bacteria;Bacteria_none;Bacillota;Clostridia;Peptostreptococcales;Anaerovoracaceae;Emergencia;Emergencia timonensis
Clostridioides difficile 186 33 0 219 Bacteria Bacteria_none Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Clostridioides Bacteria;Bacteria_none;Bacillota;Clostridia;Peptostreptococcales;Peptostreptococcaceae;Clostridioides;Clostridioides difficile
Intestinibacter bartlettii 39 10 0 49 Bacteria Bacteria_none Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Intestinibacter Bacteria;Bacteria_none;Bacillota;Clostridia;Peptostreptococcales;Peptostreptococcaceae;Intestinibacter;Intestinibacter bartlettii
Paraclostridium sordellii 11 0 0 11 Bacteria Bacteria_none Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Paraclostridium Bacteria;Bacteria_none;Bacillota;Clostridia;Peptostreptococcales;Peptostreptococcaceae;Paraclostridium;Paraclostridium sordellii
Romboutsia ilealis 136 0 0 136 Bacteria Bacteria_none Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Romboutsia Bacteria;Bacteria_none;Bacillota;Clostridia;Peptostreptococcales;Peptostreptococcaceae;Romboutsia;Romboutsia ilealis
Romboutsia sp. 13368 13 0 0 13 Bacteria Bacteria_none Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Romboutsia Bacteria;Bacteria_none;Bacillota;Clostridia;Peptostreptococcales;Peptostreptococcaceae;Romboutsia;Romboutsia sp. 13368
Romboutsia sp. CE17 12 0 0 12 Bacteria Bacteria_none Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Romboutsia Bacteria;Bacteria_none;Bacillota;Clostridia;Peptostreptococcales;Peptostreptococcaceae;Romboutsia;Romboutsia sp. CE17
Faecalibacillus intestinalis 635 1161 0 1796 Bacteria Bacteria_none Bacillota Erysipelotrichia Erysipelotrichales Coprobacillaceae Faecalibacillus Bacteria;Bacteria_none;Bacillota;Erysipelotrichia;Erysipelotrichales;Coprobacillaceae;Faecalibacillus;Faecalibacillus intestinalis
Thomasclavelia ramosa 32 0 0 32 Bacteria Bacteria_none Bacillota Erysipelotrichia Erysipelotrichales Coprobacillaceae Thomasclavelia Bacteria;Bacteria_none;Bacillota;Erysipelotrichia;Erysipelotrichales;Coprobacillaceae;Thomasclavelia;Thomasclavelia ramosa
Amedibacterium intestinale 16 0 0 16 Bacteria Bacteria_none Bacillota Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Amedibacterium Bacteria;Bacteria_none;Bacillota;Erysipelotrichia;Erysipelotrichales;Erysipelotrichaceae;Amedibacterium;Amedibacterium intestinale
[Clostridium] innocuum 96 0 0 96 Bacteria Bacteria_none Bacillota Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Erysipelotrichaceae_Incertae_sedis Bacteria;Bacteria_none;Bacillota;Erysipelotrichia;Erysipelotrichales;Erysipelotrichaceae;Erysipelotrichaceae_Incertae_sedis;[Clostridium] innocuum
Turicibacter bilis 40 0 0 40 Bacteria Bacteria_none Bacillota Erysipelotrichia Erysipelotrichales Turicibacteraceae Turicibacter Bacteria;Bacteria_none;Bacillota;Erysipelotrichia;Erysipelotrichales;Turicibacteraceae;Turicibacter;Turicibacter bilis
Turicibacter sanguinis 12 0 0 12 Bacteria Bacteria_none Bacillota Erysipelotrichia Erysipelotrichales Turicibacteraceae Turicibacter Bacteria;Bacteria_none;Bacillota;Erysipelotrichia;Erysipelotrichales;Turicibacteraceae;Turicibacter;Turicibacter sanguinis
Phascolarctobacterium faecium 416 0 0 416 Bacteria Bacteria_none Bacillota Negativicutes Acidaminococcales Acidaminococcaceae Phascolarctobacterium Bacteria;Bacteria_none;Bacillota;Negativicutes;Acidaminococcales;Acidaminococcaceae;Phascolarctobacterium;Phascolarctobacterium faecium
Megamonas funiformis 1104 2262 0 3366 Bacteria Bacteria_none Bacillota Negativicutes Selenomonadales Selenomonadaceae Megamonas Bacteria;Bacteria_none;Bacillota;Negativicutes;Selenomonadales;Selenomonadaceae;Megamonas;Megamonas funiformis
Selenomonas sputigena 14 0 0 14 Bacteria Bacteria_none Bacillota Negativicutes Selenomonadales Selenomonadaceae Selenomonas Bacteria;Bacteria_none;Bacillota;Negativicutes;Selenomonadales;Selenomonadaceae;Selenomonas;Selenomonas sputigena
Dialister succinatiphilus 12 0 0 12 Bacteria Bacteria_none Bacillota Negativicutes Veillonellales Veillonellaceae Dialister Bacteria;Bacteria_none;Bacillota;Negativicutes;Veillonellales;Veillonellaceae;Dialister;Dialister succinatiphilus
Parvimonas micra 13 0 0 13 Bacteria Bacteria_none Bacillota Tissierellia Tissierellales Peptoniphilaceae Parvimonas Bacteria;Bacteria_none;Bacillota;Tissierellia;Tissierellales;Peptoniphilaceae;Parvimonas;Parvimonas micra
Peptoniphilus genitalis 16 0 0 16 Bacteria Bacteria_none Bacillota Tissierellia Tissierellales Peptoniphilaceae Peptoniphilus Bacteria;Bacteria_none;Bacillota;Tissierellia;Tissierellales;Peptoniphilaceae;Peptoniphilus;Peptoniphilus genitalis
Dissulfurimicrobium hydrothermale 10 0 0 10 Bacteria Bacteria_none Bacteria_none_none Deltaproteobacteria Deltaproteobacteria_Incertae_sedis Deltaproteobacteria_Incertae_sedis Dissulfurimicrobium Bacteria;Bacteria_none;Bacteria_none_none;Deltaproteobacteria;Deltaproteobacteria_Incertae_sedis;Deltaproteobacteria_Incertae_sedis;Dissulfurimicrobium;Dissulfurimicrobium hydrothermale
Bacteroides caccae 80 16 0 96 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides caccae
Bacteroides caecimuris 22 0 0 22 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides caecimuris
Bacteroides cellulosilyticus 1330 2692 0 4022 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides cellulosilyticus
Bacteroides eggerthii 73 0 0 73 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides eggerthii
Bacteroides faecis 1349 2730 0 4079 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides faecis
Bacteroides faecium 18 0 0 18 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides faecium
Bacteroides finegoldii 262 59 16 337 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides finegoldii
Bacteroides fragilis 231 17 15 263 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides fragilis
Bacteroides heparinolyticus 17 0 0 17 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides heparinolyticus
Bacteroides humanifaecis 139 0 0 139 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides humanifaecis
Bacteroides intestinalis 19 23 0 42 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides intestinalis
Bacteroides luhongzhouii 16 0 0 16 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides luhongzhouii
Bacteroides nordii 15 0 0 15 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides nordii
Bacteroides ovatus 1030 2055 0 3085 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides ovatus
Bacteroides salyersiae 437 0 0 437 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides salyersiae
Bacteroides sp. A1C1 53 0 0 53 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides sp. A1C1
Bacteroides sp. CACC 737 54 0 0 54 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides sp. CACC 737
Bacteroides sp. D2 51 0 0 51 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides sp. D2
Bacteroides sp. DH3716P 23 0 0 23 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides sp. DH3716P
Bacteroides sp. HF-162 19 0 0 19 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides sp. HF-162
Bacteroides sp. M10 28 0 0 28 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides sp. M10
Bacteroides sp. MSB163 16 15 0 31 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides sp. MSB163
Bacteroides stercoris 39 0 0 39 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides stercoris
Bacteroides thetaiotaomicron 368 50 38 456 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides thetaiotaomicron
Bacteroides uniformis 1162 2432 0 3594 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides uniformis
Bacteroides xylanisolvens 567 1207 22 1796 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides xylanisolvens
Bacteroides zhangwenhongii 29 0 0 29 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides zhangwenhongii
Bacteroides_uncultured 0 10 12 22 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides_uncultured
Phocaeicola coprophilus 12 0 0 12 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Phocaeicola Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Phocaeicola;Phocaeicola coprophilus
Phocaeicola dorei 2402 4804 11777 18983 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Phocaeicola Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Phocaeicola;Phocaeicola dorei
Phocaeicola vulgatus 5398 11093 27478 43969 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Phocaeicola Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Phocaeicola;Phocaeicola vulgatus
Butyricimonas faecalis 77 0 0 77 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Odoribacteraceae Butyricimonas Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Odoribacteraceae;Butyricimonas;Butyricimonas faecalis
Butyricimonas faecihominis 12 0 0 12 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Odoribacteraceae Butyricimonas Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Odoribacteraceae;Butyricimonas;Butyricimonas faecihominis
Butyricimonas virosa 48 0 0 48 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Odoribacteraceae Butyricimonas Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Odoribacteraceae;Butyricimonas;Butyricimonas virosa
Odoribacter splanchnicus 264 0 0 264 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Odoribacteraceae Odoribacter Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Odoribacteraceae;Odoribacter;Odoribacter splanchnicus
Alistipes communis 92 0 0 92 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Alistipes Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Rikenellaceae;Alistipes;Alistipes communis
Alistipes dispar 36 0 0 36 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Alistipes Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Rikenellaceae;Alistipes;Alistipes dispar
Alistipes finegoldii 34 0 0 34 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Alistipes Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Rikenellaceae;Alistipes;Alistipes finegoldii
Alistipes onderdonkii 109 0 0 109 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Alistipes Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Rikenellaceae;Alistipes;Alistipes onderdonkii
Alistipes senegalensis 42 0 0 42 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Alistipes Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Rikenellaceae;Alistipes;Alistipes senegalensis
Alistipes_uncultured 39 14 37 90 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Alistipes Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Rikenellaceae;Alistipes;Alistipes_uncultured
Parabacteroides distasonis 954 2034 0 2988 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Parabacteroides Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Tannerellaceae;Parabacteroides;Parabacteroides distasonis
Parabacteroides goldsteinii 31 0 0 31 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Parabacteroides Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Tannerellaceae;Parabacteroides;Parabacteroides goldsteinii
Parabacteroides johnsonii 169 0 0 169 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Parabacteroides Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Tannerellaceae;Parabacteroides;Parabacteroides johnsonii
Parabacteroides merdae 192 0 0 192 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Parabacteroides Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Tannerellaceae;Parabacteroides;Parabacteroides merdae
Komagataeibacter oboediens 42 0 0 42 Bacteria Bacteria_none Pseudomonadota Alphaproteobacteria Rhodospirillales Acetobacteraceae Komagataeibacter Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Rhodospirillales;Acetobacteraceae;Komagataeibacter;Komagataeibacter oboediens
Sutterella wadsworthensis 79 0 0 79 Bacteria Bacteria_none Pseudomonadota Betaproteobacteria Burkholderiales Sutterellaceae Sutterella Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales;Sutterellaceae;Sutterella;Sutterella wadsworthensis
Turicimonas muris 18 0 0 18 Bacteria Bacteria_none Pseudomonadota Betaproteobacteria Burkholderiales Sutterellaceae Turicimonas Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales;Sutterellaceae;Turicimonas;Turicimonas muris
Escherichia coli 93 0 0 93 Bacteria Bacteria_none Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Escherichia;Escherichia coli
Klebsiella grimontii 33 0 0 33 Bacteria Bacteria_none Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella;Klebsiella grimontii
Legionella cardiaca 14 0 0 14 Bacteria Bacteria_none Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Legionellales;Legionellaceae;Legionella;Legionella cardiaca
Treponema vincentii 11 0 0 11 Bacteria Bacteria_none Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Bacteria;Bacteria_none;Spirochaetota;Spirochaetia;Spirochaetales;Treponemataceae;Treponema;Treponema vincentii
Desulfovibrio fairfieldensis 14 0 0 14 Bacteria Bacteria_none Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Bacteria;Bacteria_none;Thermodesulfobacteriota;Desulfovibrionia;Desulfovibrionales;Desulfovibrionaceae;Desulfovibrio;Desulfovibrio fairfieldensis
Desulfovibrio sp. G11 14 0 0 14 Bacteria Bacteria_none Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Bacteria;Bacteria_none;Thermodesulfobacteriota;Desulfovibrionia;Desulfovibrionales;Desulfovibrionaceae;Desulfovibrio;Desulfovibrio sp. G11
Akkermansia massiliensis 28 0 0 28 Bacteria Bacteria_none Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Bacteria;Bacteria_none;Verrucomicrobiota;Verrucomicrobiia;Verrucomicrobiales;Akkermansiaceae;Akkermansia;Akkermansia massiliensis
Akkermansia muciniphila 803 1565 0 2368 Bacteria Bacteria_none Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Bacteria;Bacteria_none;Verrucomicrobiota;Verrucomicrobiia;Verrucomicrobiales;Akkermansiaceae;Akkermansia;Akkermansia muciniphila
Homo sapiens 729 1448 15 2192 Eukaryota Metazoa Chordata Mammalia Primates Hominidae Homo Eukaryota;Metazoa;Chordata;Mammalia;Primates;Hominidae;Homo;Homo sapiens
Unknown 4069 3986 96 8151 Unclassified Unknown Unknown Unknown Unknown Unknown Unknown Unclassified;Unknown;Unknown;Unknown;Unknown;Unknown;Unknown;Unknown

Rarefied abundance table for the phylum rank.

All samples have been randomly subsetted to have the same number of reads.

phylum barcode01 barcode02 barcode03 total superkingdom kingdom tax
Euryarchaeota 146 0 0 45 Archaea Archaea_none Archaea;Archaea_none;Euryarchaeota
Actinomycetota 375 0 0 110 Bacteria Bacteria_none Bacteria;Bacteria_none;Actinomycetota
Bacillota 29465 26175 24783 26551 Bacteria Bacteria_none Bacteria;Bacteria_none;Bacillota
Bacteria_none_none 8 0 0 2 Bacteria Bacteria_none Bacteria;Bacteria_none;Bacteria_none_none
Bacteroidota 16500 20885 27264 22085 Bacteria Bacteria_none Bacteria;Bacteria_none;Bacteroidota
Pseudomonadota 265 0 0 77 Bacteria Bacteria_none Bacteria;Bacteria_none;Pseudomonadota
Spirochaetota 11 0 0 5 Bacteria Bacteria_none Bacteria;Bacteria_none;Spirochaetota
Thermodesulfobacteriota 28 0 0 11 Bacteria Bacteria_none Bacteria;Bacteria_none;Thermodesulfobacteriota
Verrucomicrobiota 791 1148 0 605 Bacteria Bacteria_none Bacteria;Bacteria_none;Verrucomicrobiota
Chordata 680 1044 11 546 Eukaryota Metazoa Eukaryota;Metazoa;Chordata
Unknown 3857 2874 68 2089 Unclassified Unknown Unclassified;Unknown;Unknown

Rarefied abundance table for the class rank.

All samples have been randomly subsetted to have the same number of reads.

class barcode01 barcode02 barcode03 total superkingdom kingdom phylum tax
Methanobacteria 144 0 0 34 Archaea Archaea_none Euryarchaeota Archaea;Archaea_none;Euryarchaeota;Methanobacteria
Actinomycetes 200 0 0 51 Bacteria Bacteria_none Actinomycetota Bacteria;Bacteria_none;Actinomycetota;Actinomycetes
Coriobacteriia 170 0 0 51 Bacteria Bacteria_none Actinomycetota Bacteria;Bacteria_none;Actinomycetota;Coriobacteriia
Bacilli 232 0 0 69 Bacteria Bacteria_none Bacillota Bacteria;Bacteria_none;Bacillota;Bacilli
Clostridia 26945 23815 24775 25125 Bacteria Bacteria_none Bacillota Bacteria;Bacteria_none;Bacillota;Clostridia
Erysipelotrichia 784 858 0 494 Bacteria Bacteria_none Bacillota Bacteria;Bacteria_none;Bacillota;Erysipelotrichia
Negativicutes 1470 1636 0 992 Bacteria Bacteria_none Bacillota Bacteria;Bacteria_none;Bacillota;Negativicutes
Tissierellia 29 0 0 8 Bacteria Bacteria_none Bacillota Bacteria;Bacteria_none;Bacillota;Tissierellia
Deltaproteobacteria 10 0 0 0 Bacteria Bacteria_none Bacteria_none_none Bacteria;Bacteria_none;Bacteria_none_none;Deltaproteobacteria
Bacteroidia 16490 20910 27276 21898 Bacteria Bacteria_none Bacteroidota Bacteria;Bacteria_none;Bacteroidota;Bacteroidia
Alphaproteobacteria 39 0 0 9 Bacteria Bacteria_none Pseudomonadota Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria
Betaproteobacteria 90 0 0 28 Bacteria Bacteria_none Pseudomonadota Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria
Gammaproteobacteria 134 0 0 39 Bacteria Bacteria_none Pseudomonadota Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria
Spirochaetia 10 0 0 3 Bacteria Bacteria_none Spirochaetota Bacteria;Bacteria_none;Spirochaetota;Spirochaetia
Desulfovibrionia 28 0 0 5 Bacteria Bacteria_none Thermodesulfobacteriota Bacteria;Bacteria_none;Thermodesulfobacteriota;Desulfovibrionia
Verrucomicrobiia 785 1101 0 657 Bacteria Bacteria_none Verrucomicrobiota Bacteria;Bacteria_none;Verrucomicrobiota;Verrucomicrobiia
Mammalia 694 1004 11 575 Eukaryota Metazoa Chordata Eukaryota;Metazoa;Chordata;Mammalia
Unknown 3872 2802 64 2088 Unclassified Unknown Unknown Unclassified;Unknown;Unknown;Unknown

Rarefied abundance table for the order rank.

All samples have been randomly subsetted to have the same number of reads.

order barcode01 barcode02 barcode03 total superkingdom kingdom phylum class tax
Methanobacteriales 144 0 0 38 Archaea Archaea_none Euryarchaeota Methanobacteria Archaea;Archaea_none;Euryarchaeota;Methanobacteria;Methanobacteriales
Bifidobacteriales 205 0 0 65 Bacteria Bacteria_none Actinomycetota Actinomycetes Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Bifidobacteriales
Coriobacteriales 62 0 0 19 Bacteria Bacteria_none Actinomycetota Coriobacteriia Bacteria;Bacteria_none;Actinomycetota;Coriobacteriia;Coriobacteriales
Eggerthellales 112 0 0 28 Bacteria Bacteria_none Actinomycetota Coriobacteriia Bacteria;Bacteria_none;Actinomycetota;Coriobacteriia;Eggerthellales
Bacillales 47 0 0 16 Bacteria Bacteria_none Bacillota Bacilli Bacteria;Bacteria_none;Bacillota;Bacilli;Bacillales
Lactobacillales 179 0 0 50 Bacteria Bacteria_none Bacillota Bacilli Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales
Christensenellales 13 0 0 4 Bacteria Bacteria_none Bacillota Clostridia Bacteria;Bacteria_none;Bacillota;Clostridia;Christensenellales
Eubacteriales 11074 7194 12351 10189 Bacteria Bacteria_none Bacillota Clostridia Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales
Lachnospirales 15188 16576 12517 14561 Bacteria Bacteria_none Bacillota Clostridia Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales
Monoglobales 276 0 0 75 Bacteria Bacteria_none Bacillota Clostridia Bacteria;Bacteria_none;Bacillota;Clostridia;Monoglobales
Peptostreptococcales 393 31 0 111 Bacteria Bacteria_none Bacillota Clostridia Bacteria;Bacteria_none;Bacillota;Clostridia;Peptostreptococcales
Erysipelotrichales 783 834 0 511 Bacteria Bacteria_none Bacillota Erysipelotrichia Bacteria;Bacteria_none;Bacillota;Erysipelotrichia;Erysipelotrichales
Acidaminococcales 398 0 0 115 Bacteria Bacteria_none Bacillota Negativicutes Bacteria;Bacteria_none;Bacillota;Negativicutes;Acidaminococcales
Selenomonadales 1061 1618 0 882 Bacteria Bacteria_none Bacillota Negativicutes Bacteria;Bacteria_none;Bacillota;Negativicutes;Selenomonadales
Veillonellales 12 0 0 0 Bacteria Bacteria_none Bacillota Negativicutes Bacteria;Bacteria_none;Bacillota;Negativicutes;Veillonellales
Tissierellales 29 0 0 4 Bacteria Bacteria_none Bacillota Tissierellia Bacteria;Bacteria_none;Bacillota;Tissierellia;Tissierellales
Deltaproteobacteria_Incertae_sedis 9 0 0 2 Bacteria Bacteria_none Bacteria_none_none Deltaproteobacteria Bacteria;Bacteria_none;Bacteria_none_none;Deltaproteobacteria;Deltaproteobacteria_Incertae_sedis
Bacteroidales 16485 20965 27178 22031 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales
Rhodospirillales 38 0 0 14 Bacteria Bacteria_none Pseudomonadota Alphaproteobacteria Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Rhodospirillales
Burkholderiales 93 0 0 33 Bacteria Bacteria_none Pseudomonadota Betaproteobacteria Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales
Enterobacterales 119 0 0 25 Bacteria Bacteria_none Pseudomonadota Gammaproteobacteria Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Enterobacterales
Legionellales 14 0 0 3 Bacteria Bacteria_none Pseudomonadota Gammaproteobacteria Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Legionellales
Spirochaetales 11 0 0 5 Bacteria Bacteria_none Spirochaetota Spirochaetia Bacteria;Bacteria_none;Spirochaetota;Spirochaetia;Spirochaetales
Desulfovibrionales 28 0 0 8 Bacteria Bacteria_none Thermodesulfobacteriota Desulfovibrionia Bacteria;Bacteria_none;Thermodesulfobacteriota;Desulfovibrionia;Desulfovibrionales
Verrucomicrobiales 774 1119 0 663 Bacteria Bacteria_none Verrucomicrobiota Verrucomicrobiia Bacteria;Bacteria_none;Verrucomicrobiota;Verrucomicrobiia;Verrucomicrobiales
Primates 701 1026 7 580 Eukaryota Metazoa Chordata Mammalia Eukaryota;Metazoa;Chordata;Mammalia;Primates
Unknown 3878 2763 73 2094 Unclassified Unknown Unknown Unknown Unclassified;Unknown;Unknown;Unknown;Unknown

Rarefied abundance table for the family rank.

All samples have been randomly subsetted to have the same number of reads.

family barcode01 barcode02 barcode03 total superkingdom kingdom phylum class order tax
Methanobacteriaceae 142 0 0 46 Archaea Archaea_none Euryarchaeota Methanobacteria Methanobacteriales Archaea;Archaea_none;Euryarchaeota;Methanobacteria;Methanobacteriales;Methanobacteriaceae
Bifidobacteriaceae 202 0 0 44 Bacteria Bacteria_none Actinomycetota Actinomycetes Bifidobacteriales Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae
Coriobacteriaceae 59 0 0 18 Bacteria Bacteria_none Actinomycetota Coriobacteriia Coriobacteriales Bacteria;Bacteria_none;Actinomycetota;Coriobacteriia;Coriobacteriales;Coriobacteriaceae
Eggerthellaceae 116 0 0 23 Bacteria Bacteria_none Actinomycetota Coriobacteriia Eggerthellales Bacteria;Bacteria_none;Actinomycetota;Coriobacteriia;Eggerthellales;Eggerthellaceae
Bacillaceae 24 0 0 8 Bacteria Bacteria_none Bacillota Bacilli Bacillales Bacteria;Bacteria_none;Bacillota;Bacilli;Bacillales;Bacillaceae
Paenibacillaceae 24 0 0 5 Bacteria Bacteria_none Bacillota Bacilli Bacillales Bacteria;Bacteria_none;Bacillota;Bacilli;Bacillales;Paenibacillaceae
Enterococcaceae 48 0 0 14 Bacteria Bacteria_none Bacillota Bacilli Lactobacillales Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Enterococcaceae
Lactobacillaceae 31 0 0 9 Bacteria Bacteria_none Bacillota Bacilli Lactobacillales Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae
Streptococcaceae 101 0 0 21 Bacteria Bacteria_none Bacillota Bacilli Lactobacillales Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Streptococcaceae
Christensenellaceae 14 0 0 3 Bacteria Bacteria_none Bacillota Clostridia Christensenellales Bacteria;Bacteria_none;Bacillota;Clostridia;Christensenellales;Christensenellaceae
Acutalibacteraceae 58 0 0 15 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Acutalibacteraceae
Aristaeellaceae 31 0 0 12 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Aristaeellaceae
Butyricicoccaceae 41 0 6 12 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Butyricicoccaceae
Clostridiaceae 378 0 0 99 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Clostridiaceae
Eubacteriaceae 233 6 0 66 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Eubacteriaceae
Eubacteriales_Incertae_sedis 218 0 0 57 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Eubacteriales_Incertae_sedis
Maliibacteriaceae 27 0 0 9 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Maliibacteriaceae
Oscillospiraceae 10100 7277 12399 9915 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae
Lachnospiraceae 15163 16571 12476 14600 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae
Monoglobaceae 277 0 0 72 Bacteria Bacteria_none Bacillota Clostridia Monoglobales Bacteria;Bacteria_none;Bacillota;Clostridia;Monoglobales;Monoglobaceae
Anaerovoracaceae 23 0 0 6 Bacteria Bacteria_none Bacillota Clostridia Peptostreptococcales Bacteria;Bacteria_none;Bacillota;Clostridia;Peptostreptococcales;Anaerovoracaceae
Peptostreptococcaceae 373 35 0 117 Bacteria Bacteria_none Bacillota Clostridia Peptostreptococcales Bacteria;Bacteria_none;Bacillota;Clostridia;Peptostreptococcales;Peptostreptococcaceae
Coprobacillaceae 639 824 0 471 Bacteria Bacteria_none Bacillota Erysipelotrichia Erysipelotrichales Bacteria;Bacteria_none;Bacillota;Erysipelotrichia;Erysipelotrichales;Coprobacillaceae
Erysipelotrichaceae 105 0 0 27 Bacteria Bacteria_none Bacillota Erysipelotrichia Erysipelotrichales Bacteria;Bacteria_none;Bacillota;Erysipelotrichia;Erysipelotrichales;Erysipelotrichaceae
Turicibacteraceae 48 0 0 10 Bacteria Bacteria_none Bacillota Erysipelotrichia Erysipelotrichales Bacteria;Bacteria_none;Bacillota;Erysipelotrichia;Erysipelotrichales;Turicibacteraceae
Acidaminococcaceae 400 0 0 130 Bacteria Bacteria_none Bacillota Negativicutes Acidaminococcales Bacteria;Bacteria_none;Bacillota;Negativicutes;Acidaminococcales;Acidaminococcaceae
Selenomonadaceae 1068 1620 0 860 Bacteria Bacteria_none Bacillota Negativicutes Selenomonadales Bacteria;Bacteria_none;Bacillota;Negativicutes;Selenomonadales;Selenomonadaceae
Veillonellaceae 12 0 0 5 Bacteria Bacteria_none Bacillota Negativicutes Veillonellales Bacteria;Bacteria_none;Bacillota;Negativicutes;Veillonellales;Veillonellaceae
Peptoniphilaceae 29 0 0 10 Bacteria Bacteria_none Bacillota Tissierellia Tissierellales Bacteria;Bacteria_none;Bacillota;Tissierellia;Tissierellales;Peptoniphilaceae
Deltaproteobacteria_Incertae_sedis 10 0 0 0 Bacteria Bacteria_none Bacteria_none_none Deltaproteobacteria Deltaproteobacteria_Incertae_sedis Bacteria;Bacteria_none;Bacteria_none_none;Deltaproteobacteria;Deltaproteobacteria_Incertae_sedis;Deltaproteobacteria_Incertae_sedis
Bacteroidaceae 14464 19345 27140 21032 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae
Odoribacteraceae 386 0 0 121 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Odoribacteraceae
Rikenellaceae 332 9 24 102 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Rikenellaceae
Tannerellaceae 1285 1445 0 828 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Tannerellaceae
Acetobacteraceae 38 0 0 11 Bacteria Bacteria_none Pseudomonadota Alphaproteobacteria Rhodospirillales Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Rhodospirillales;Acetobacteraceae
Sutterellaceae 95 0 0 29 Bacteria Bacteria_none Pseudomonadota Betaproteobacteria Burkholderiales Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales;Sutterellaceae
Enterobacteriaceae 123 0 0 27 Bacteria Bacteria_none Pseudomonadota Gammaproteobacteria Enterobacterales Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae
Legionellaceae 13 0 0 2 Bacteria Bacteria_none Pseudomonadota Gammaproteobacteria Legionellales Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Legionellales;Legionellaceae
Treponemataceae 10 0 0 3 Bacteria Bacteria_none Spirochaetota Spirochaetia Spirochaetales Bacteria;Bacteria_none;Spirochaetota;Spirochaetia;Spirochaetales;Treponemataceae
Desulfovibrionaceae 26 0 0 6 Bacteria Bacteria_none Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Bacteria;Bacteria_none;Thermodesulfobacteriota;Desulfovibrionia;Desulfovibrionales;Desulfovibrionaceae
Akkermansiaceae 797 1116 0 626 Bacteria Bacteria_none Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Bacteria;Bacteria_none;Verrucomicrobiota;Verrucomicrobiia;Verrucomicrobiales;Akkermansiaceae
Hominidae 693 1024 10 551 Eukaryota Metazoa Chordata Mammalia Primates Eukaryota;Metazoa;Chordata;Mammalia;Primates;Hominidae
Unknown 3870 2854 71 2104 Unclassified Unknown Unknown Unknown Unknown Unclassified;Unknown;Unknown;Unknown;Unknown;Unknown

Rarefied abundance table for the genus rank.

All samples have been randomly subsetted to have the same number of reads.

genus barcode01 barcode02 barcode03 total superkingdom kingdom phylum class order family tax
Methanobrevibacter 145 0 0 40 Archaea Archaea_none Euryarchaeota Methanobacteria Methanobacteriales Methanobacteriaceae Archaea;Archaea_none;Euryarchaeota;Methanobacteria;Methanobacteriales;Methanobacteriaceae;Methanobrevibacter
Bifidobacterium 205 0 0 59 Bacteria Bacteria_none Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium
Collinsella 62 0 0 14 Bacteria Bacteria_none Actinomycetota Coriobacteriia Coriobacteriales Coriobacteriaceae Bacteria;Bacteria_none;Actinomycetota;Coriobacteriia;Coriobacteriales;Coriobacteriaceae;Collinsella
Adlercreutzia 92 0 0 26 Bacteria Bacteria_none Actinomycetota Coriobacteriia Eggerthellales Eggerthellaceae Bacteria;Bacteria_none;Actinomycetota;Coriobacteriia;Eggerthellales;Eggerthellaceae;Adlercreutzia
Eggerthella 21 0 0 5 Bacteria Bacteria_none Actinomycetota Coriobacteriia Eggerthellales Eggerthellaceae Bacteria;Bacteria_none;Actinomycetota;Coriobacteriia;Eggerthellales;Eggerthellaceae;Eggerthella
Bacillus 24 0 0 7 Bacteria Bacteria_none Bacillota Bacilli Bacillales Bacillaceae Bacteria;Bacteria_none;Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus
Paenibacillus 23 0 0 5 Bacteria Bacteria_none Bacillota Bacilli Bacillales Paenibacillaceae Bacteria;Bacteria_none;Bacillota;Bacilli;Bacillales;Paenibacillaceae;Paenibacillus
Enterococcus 49 0 0 17 Bacteria Bacteria_none Bacillota Bacilli Lactobacillales Enterococcaceae Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus
Lactiplantibacillus 22 0 0 9 Bacteria Bacteria_none Bacillota Bacilli Lactobacillales Lactobacillaceae Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus
Ligilactobacillus 9 0 0 3 Bacteria Bacteria_none Bacillota Bacilli Lactobacillales Lactobacillaceae Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Ligilactobacillus
Lactococcus 47 0 0 12 Bacteria Bacteria_none Bacillota Bacilli Lactobacillales Streptococcaceae Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus
Streptococcus 52 0 0 15 Bacteria Bacteria_none Bacillota Bacilli Lactobacillales Streptococcaceae Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus
Christensenella 13 0 0 5 Bacteria Bacteria_none Bacillota Clostridia Christensenellales Christensenellaceae Bacteria;Bacteria_none;Bacillota;Clostridia;Christensenellales;Christensenellaceae;Christensenella
Acutalibacter 31 0 0 7 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Acutalibacteraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Acutalibacteraceae;Acutalibacter
Caproicibacter 31 0 0 2 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Acutalibacteraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Acutalibacteraceae;Caproicibacter
Aristaeella 29 0 0 10 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Aristaeellaceae Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Aristaeellaceae;Aristaeella
Agathobaculum 13 0 0 2 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Butyricicoccaceae Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Butyricicoccaceae;Agathobaculum
Intestinibacillus 28 0 7 11 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Butyricicoccaceae Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Butyricicoccaceae;Intestinibacillus
Clostridium 380 0 0 119 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Clostridiaceae Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Clostridium
Eubacterium 229 8 0 48 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Eubacteriaceae Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Eubacteriaceae;Eubacterium
Flintibacter 63 0 0 15 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Eubacteriales_Incertae_sedis Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Eubacteriales_Incertae_sedis;Flintibacter
Intestinimonas 120 0 0 37 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Eubacteriales_Incertae_sedis Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Eubacteriales_Incertae_sedis;Intestinimonas
Massilistercora 38 0 0 13 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Eubacteriales_Incertae_sedis Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Eubacteriales_Incertae_sedis;Massilistercora
Maliibacterium 28 0 0 7 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Maliibacteriaceae Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Maliibacteriaceae;Maliibacterium
Anaerotruncus 139 0 0 33 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Anaerotruncus
Caproicibacterium 28 0 0 10 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Caproicibacterium
Dysosmobacter 148 0 0 37 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Dysosmobacter
Ethanoligenens 13 0 0 3 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Ethanoligenens
Faecalibacterium 5566 4976 6988 5856 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Faecalibacterium
Flavonifractor 422 0 0 125 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Flavonifractor
Lawsonibacter 180 0 0 51 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Lawsonibacter
Oscillibacter 238 24 0 68 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Oscillibacter
Paludihabitans 39 0 0 12 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Paludihabitans
Pusillibacter 132 0 0 36 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Pusillibacter
Ruminococcus 1818 2181 5283 3294 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Ruminococcus
Ruthenibacterium 146 0 0 38 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Ruthenibacterium
Solibaculum 36 0 0 11 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Solibaculum
Subdoligranulum 470 45 76 163 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Subdoligranulum
Thermocaproicibacter 19 0 0 4 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Thermocaproicibacter
Vescimonas 678 0 0 182 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Vescimonas
Agathobacter 1151 1538 46 891 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Agathobacter
Anaerobutyricum 1591 2232 5476 3330 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Anaerobutyricum
Anaerocolumna 124 0 0 32 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Anaerocolumna
Anaeromicropila 21 0 0 2 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Anaeromicropila
Anaerostipes 1033 1401 29 795 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Anaerostipes
Blautia 1690 1250 101 948 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Blautia
Butyrivibrio 195 8 0 45 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Butyrivibrio
Chordicoccus 24 0 0 4 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Chordicoccus
Claveliimonas 49 0 0 9 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Claveliimonas
Coprococcus 1164 934 0 625 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Coprococcus
Dorea 1591 1697 0 1009 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Dorea
Enterocloster 279 6 7 83 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Enterocloster
Herbinix 10 0 0 4 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Herbinix
Hungatella 56 0 0 15 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Hungatella
Kineothrix 43 5 0 10 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Kineothrix
Lachnoanaerobaculum 21 0 0 6 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Lachnoanaerobaculum
Lachnoclostridium 391 61 19 100 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Lachnoclostridium
Lachnospira 1893 2764 6765 3966 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Lachnospira
Lacrimispora 61 0 0 12 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Lacrimispora
Marvinbryantia 13 0 0 2 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Marvinbryantia
Mediterraneibacter 763 1059 10 611 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Mediterraneibacter
Novisyntrophococcus 51 0 0 18 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Novisyntrophococcus
Pseudobutyrivibrio 34 0 0 7 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Pseudobutyrivibrio
Qiania 49 0 0 16 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Qiania
Roseburia 2022 2451 38 1499 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Roseburia
Sellimonas 63 0 0 19 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Sellimonas
Simiaoa 691 1030 0 608 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Simiaoa
Stomatobaculum 15 0 0 6 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Stomatobaculum
Wansuia 79 0 0 19 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Wansuia
Wujia 44 0 0 13 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Wujia
Monoglobus 280 0 0 78 Bacteria Bacteria_none Bacillota Clostridia Monoglobales Monoglobaceae Bacteria;Bacteria_none;Bacillota;Clostridia;Monoglobales;Monoglobaceae;Monoglobus
Aminipila 11 0 0 4 Bacteria Bacteria_none Bacillota Clostridia Peptostreptococcales Anaerovoracaceae Bacteria;Bacteria_none;Bacillota;Clostridia;Peptostreptococcales;Anaerovoracaceae;Aminipila
Emergencia 11 0 0 2 Bacteria Bacteria_none Bacillota Clostridia Peptostreptococcales Anaerovoracaceae Bacteria;Bacteria_none;Bacillota;Clostridia;Peptostreptococcales;Anaerovoracaceae;Emergencia
Clostridioides 176 20 0 69 Bacteria Bacteria_none Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Bacteria;Bacteria_none;Bacillota;Clostridia;Peptostreptococcales;Peptostreptococcaceae;Clostridioides
Intestinibacter 37 7 0 9 Bacteria Bacteria_none Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Bacteria;Bacteria_none;Bacillota;Clostridia;Peptostreptococcales;Peptostreptococcaceae;Intestinibacter
Paraclostridium 11 0 0 4 Bacteria Bacteria_none Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Bacteria;Bacteria_none;Bacillota;Clostridia;Peptostreptococcales;Peptostreptococcaceae;Paraclostridium
Romboutsia 152 0 0 47 Bacteria Bacteria_none Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Bacteria;Bacteria_none;Bacillota;Clostridia;Peptostreptococcales;Peptostreptococcaceae;Romboutsia
Faecalibacillus 603 811 0 489 Bacteria Bacteria_none Bacillota Erysipelotrichia Erysipelotrichales Coprobacillaceae Bacteria;Bacteria_none;Bacillota;Erysipelotrichia;Erysipelotrichales;Coprobacillaceae;Faecalibacillus
Thomasclavelia 32 0 0 7 Bacteria Bacteria_none Bacillota Erysipelotrichia Erysipelotrichales Coprobacillaceae Bacteria;Bacteria_none;Bacillota;Erysipelotrichia;Erysipelotrichales;Coprobacillaceae;Thomasclavelia
Amedibacterium 15 0 0 3 Bacteria Bacteria_none Bacillota Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Bacteria;Bacteria_none;Bacillota;Erysipelotrichia;Erysipelotrichales;Erysipelotrichaceae;Amedibacterium
Erysipelotrichaceae_Incertae_sedis 94 0 0 24 Bacteria Bacteria_none Bacillota Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Bacteria;Bacteria_none;Bacillota;Erysipelotrichia;Erysipelotrichales;Erysipelotrichaceae;Erysipelotrichaceae_Incertae_sedis
Turicibacter 50 0 0 13 Bacteria Bacteria_none Bacillota Erysipelotrichia Erysipelotrichales Turicibacteraceae Bacteria;Bacteria_none;Bacillota;Erysipelotrichia;Erysipelotrichales;Turicibacteraceae;Turicibacter
Phascolarctobacterium 393 0 0 104 Bacteria Bacteria_none Bacillota Negativicutes Acidaminococcales Acidaminococcaceae Bacteria;Bacteria_none;Bacillota;Negativicutes;Acidaminococcales;Acidaminococcaceae;Phascolarctobacterium
Megamonas 1032 1628 0 830 Bacteria Bacteria_none Bacillota Negativicutes Selenomonadales Selenomonadaceae Bacteria;Bacteria_none;Bacillota;Negativicutes;Selenomonadales;Selenomonadaceae;Megamonas
Selenomonas 14 0 0 4 Bacteria Bacteria_none Bacillota Negativicutes Selenomonadales Selenomonadaceae Bacteria;Bacteria_none;Bacillota;Negativicutes;Selenomonadales;Selenomonadaceae;Selenomonas
Dialister 12 0 0 5 Bacteria Bacteria_none Bacillota Negativicutes Veillonellales Veillonellaceae Bacteria;Bacteria_none;Bacillota;Negativicutes;Veillonellales;Veillonellaceae;Dialister
Parvimonas 12 0 0 3 Bacteria Bacteria_none Bacillota Tissierellia Tissierellales Peptoniphilaceae Bacteria;Bacteria_none;Bacillota;Tissierellia;Tissierellales;Peptoniphilaceae;Parvimonas
Peptoniphilus 15 0 0 5 Bacteria Bacteria_none Bacillota Tissierellia Tissierellales Peptoniphilaceae Bacteria;Bacteria_none;Bacillota;Tissierellia;Tissierellales;Peptoniphilaceae;Peptoniphilus
Dissulfurimicrobium 10 0 0 3 Bacteria Bacteria_none Bacteria_none_none Deltaproteobacteria Deltaproteobacteria_Incertae_sedis Deltaproteobacteria_Incertae_sedis Bacteria;Bacteria_none;Bacteria_none_none;Deltaproteobacteria;Deltaproteobacteria_Incertae_sedis;Deltaproteobacteria_Incertae_sedis;Dissulfurimicrobium
Bacteroides 7074 8143 79 4819 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides
Phocaeicola 7412 11361 27101 16043 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Phocaeicola
Butyricimonas 131 0 0 28 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Odoribacteraceae Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Odoribacteraceae;Butyricimonas
Odoribacter 254 0 0 64 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Odoribacteraceae Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Odoribacteraceae;Odoribacter
Alistipes 332 9 29 102 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Rikenellaceae;Alistipes
Parabacteroides 1280 1456 0 892 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Tannerellaceae;Parabacteroides
Komagataeibacter 37 0 0 14 Bacteria Bacteria_none Pseudomonadota Alphaproteobacteria Rhodospirillales Acetobacteraceae Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Rhodospirillales;Acetobacteraceae;Komagataeibacter
Sutterella 78 0 0 19 Bacteria Bacteria_none Pseudomonadota Betaproteobacteria Burkholderiales Sutterellaceae Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales;Sutterellaceae;Sutterella
Turicimonas 18 0 0 6 Bacteria Bacteria_none Pseudomonadota Betaproteobacteria Burkholderiales Sutterellaceae Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales;Sutterellaceae;Turicimonas
Escherichia 92 0 0 22 Bacteria Bacteria_none Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Escherichia
Klebsiella 32 0 0 6 Bacteria Bacteria_none Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella
Legionella 12 0 0 3 Bacteria Bacteria_none Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Legionellales;Legionellaceae;Legionella
Treponema 10 0 0 4 Bacteria Bacteria_none Spirochaetota Spirochaetia Spirochaetales Treponemataceae Bacteria;Bacteria_none;Spirochaetota;Spirochaetia;Spirochaetales;Treponemataceae;Treponema
Desulfovibrio 25 0 0 9 Bacteria Bacteria_none Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Bacteria;Bacteria_none;Thermodesulfobacteriota;Desulfovibrionia;Desulfovibrionales;Desulfovibrionaceae;Desulfovibrio
Akkermansia 786 1158 0 637 Bacteria Bacteria_none Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Bacteria;Bacteria_none;Verrucomicrobiota;Verrucomicrobiia;Verrucomicrobiales;Akkermansiaceae;Akkermansia
Homo 699 1055 11 599 Eukaryota Metazoa Chordata Mammalia Primates Hominidae Eukaryota;Metazoa;Chordata;Mammalia;Primates;Hominidae;Homo
Unknown 3857 2808 61 2041 Unclassified Unknown Unknown Unknown Unknown Unknown Unclassified;Unknown;Unknown;Unknown;Unknown;Unknown;Unknown

Rarefied abundance table for the species rank.

All samples have been randomly subsetted to have the same number of reads.

species barcode01 barcode02 barcode03 total superkingdom kingdom phylum class order family genus tax
Methanobrevibacter smithii 143 0 0 32 Archaea Archaea_none Euryarchaeota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Archaea;Archaea_none;Euryarchaeota;Methanobacteria;Methanobacteriales;Methanobacteriaceae;Methanobrevibacter;Methanobrevibacter smithii
Bifidobacterium adolescentis 9 0 0 3 Bacteria Bacteria_none Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium;Bifidobacterium adolescentis
Bifidobacterium bifidum 60 0 0 16 Bacteria Bacteria_none Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium;Bifidobacterium bifidum
Bifidobacterium longum 28 0 0 10 Bacteria Bacteria_none Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium;Bifidobacterium longum
Bifidobacterium pseudocatenulatum 100 0 0 32 Bacteria Bacteria_none Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bacteria;Bacteria_none;Actinomycetota;Actinomycetes;Bifidobacteriales;Bifidobacteriaceae;Bifidobacterium;Bifidobacterium pseudocatenulatum
Collinsella aerofaciens 63 0 0 19 Bacteria Bacteria_none Actinomycetota Coriobacteriia Coriobacteriales Coriobacteriaceae Collinsella Bacteria;Bacteria_none;Actinomycetota;Coriobacteriia;Coriobacteriales;Coriobacteriaceae;Collinsella;Collinsella aerofaciens
Adlercreutzia hattorii 93 0 0 32 Bacteria Bacteria_none Actinomycetota Coriobacteriia Eggerthellales Eggerthellaceae Adlercreutzia Bacteria;Bacteria_none;Actinomycetota;Coriobacteriia;Eggerthellales;Eggerthellaceae;Adlercreutzia;Adlercreutzia hattorii
Eggerthella lenta 20 0 0 7 Bacteria Bacteria_none Actinomycetota Coriobacteriia Eggerthellales Eggerthellaceae Eggerthella Bacteria;Bacteria_none;Actinomycetota;Coriobacteriia;Eggerthellales;Eggerthellaceae;Eggerthella;Eggerthella lenta
Bacillus sp. DX3.1 23 0 0 8 Bacteria Bacteria_none Bacillota Bacilli Bacillales Bacillaceae Bacillus Bacteria;Bacteria_none;Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus;Bacillus sp. DX3.1
Paenibacillus sp. FSL R7-0273 22 0 0 10 Bacteria Bacteria_none Bacillota Bacilli Bacillales Paenibacillaceae Paenibacillus Bacteria;Bacteria_none;Bacillota;Bacilli;Bacillales;Paenibacillaceae;Paenibacillus;Paenibacillus sp. FSL R7-0273
Enterococcus faecium 48 0 0 14 Bacteria Bacteria_none Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus;Enterococcus faecium
Lactiplantibacillus pentosus 22 0 0 4 Bacteria Bacteria_none Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus;Lactiplantibacillus pentosus
Ligilactobacillus murinus 9 0 0 3 Bacteria Bacteria_none Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Ligilactobacillus;Ligilactobacillus murinus
Lactococcus lactis 52 0 0 12 Bacteria Bacteria_none Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus;Lactococcus lactis
Streptococcus salivarius 32 0 0 9 Bacteria Bacteria_none Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus salivarius
Streptococcus thermophilus 19 0 0 3 Bacteria Bacteria_none Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Bacteria;Bacteria_none;Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;Streptococcus thermophilus
Christensenella minuta 14 0 0 3 Bacteria Bacteria_none Bacillota Clostridia Christensenellales Christensenellaceae Christensenella Bacteria;Bacteria_none;Bacillota;Clostridia;Christensenellales;Christensenellaceae;Christensenella;Christensenella minuta
Acutalibacter muris 32 0 0 10 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Acutalibacteraceae Acutalibacter Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Acutalibacteraceae;Acutalibacter;Acutalibacter muris
Caproicibacter fermentans 28 0 0 6 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Acutalibacteraceae Caproicibacter Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Acutalibacteraceae;Caproicibacter;Caproicibacter fermentans
Aristaeella hokkaidonensis 19 0 0 3 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Aristaeellaceae Aristaeella Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Aristaeellaceae;Aristaeella;Aristaeella hokkaidonensis
Aristaeella lactis 12 0 0 5 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Aristaeellaceae Aristaeella Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Aristaeellaceae;Aristaeella;Aristaeella lactis
Agathobaculum sp. NTUH-O15-33 14 0 0 5 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Butyricicoccaceae Agathobaculum Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Butyricicoccaceae;Agathobaculum;Agathobaculum sp. NTUH-O15-33
Intestinibacillus sp. NTUH-41-i26 28 0 9 12 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Butyricicoccaceae Intestinibacillus Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Butyricicoccaceae;Intestinibacillus;Intestinibacillus sp. NTUH-41-i26
Clostridium baratii 11 0 0 6 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Clostridium;Clostridium baratii
Clostridium bornimense 23 0 0 5 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Clostridium;Clostridium bornimense
Clostridium botulinum 13 0 0 6 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Clostridium;Clostridium botulinum
Clostridium cadaveris 26 0 0 7 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Clostridium;Clostridium cadaveris
Clostridium chauvoei 11 0 0 3 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Clostridium;Clostridium chauvoei
Clostridium estertheticum 17 0 0 2 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Clostridium;Clostridium estertheticum
Clostridium gasigenes 11 0 0 3 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Clostridium;Clostridium gasigenes
Clostridium intestinale 10 0 0 3 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Clostridium;Clostridium intestinale
Clostridium isatidis 14 0 0 10 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Clostridium;Clostridium isatidis
Clostridium perfringens 61 0 0 19 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Clostridium;Clostridium perfringens
Clostridium septicum 9 0 0 1 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Clostridium;Clostridium septicum
Clostridium sp. BJN0001 15 0 0 5 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Clostridium;Clostridium sp. BJN0001
Clostridium sp. C1 14 0 0 5 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Clostridium;Clostridium sp. C1
Clostridium sp. M62/1 124 0 0 36 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Clostridium;Clostridium sp. M62/1
Clostridium sp. SY8519 28 0 0 5 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Clostridiaceae;Clostridium;Clostridium sp. SY8519
Eubacterium callanderi 36 9 0 7 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacterium Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Eubacteriaceae;Eubacterium;Eubacterium callanderi
Eubacterium maltosivorans 19 0 0 6 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacterium Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Eubacteriaceae;Eubacterium;Eubacterium maltosivorans
Eubacterium sp. MSJ-33 35 0 0 9 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacterium Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Eubacteriaceae;Eubacterium;Eubacterium sp. MSJ-33
Eubacterium ventriosum 138 0 0 38 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacterium Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Eubacteriaceae;Eubacterium;Eubacterium ventriosum
Flintibacter sp. KGMB00164 67 0 0 22 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Eubacteriales_Incertae_sedis Flintibacter Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Eubacteriales_Incertae_sedis;Flintibacter;Flintibacter sp. KGMB00164
Intestinimonas butyriciproducens 118 0 0 23 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Eubacteriales_Incertae_sedis Intestinimonas Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Eubacteriales_Incertae_sedis;Intestinimonas;Intestinimonas butyriciproducens
Massilistercora timonensis 38 0 0 9 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Eubacteriales_Incertae_sedis Massilistercora Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Eubacteriales_Incertae_sedis;Massilistercora;Massilistercora timonensis
Maliibacterium massiliense 26 0 0 7 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Maliibacteriaceae Maliibacterium Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Maliibacteriaceae;Maliibacterium;Maliibacterium massiliense
Anaerotruncus colihominis 145 0 0 39 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Anaerotruncus Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Anaerotruncus;Anaerotruncus colihominis
Caproicibacterium lactatifermentans 15 0 0 1 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Caproicibacterium Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Caproicibacterium;Caproicibacterium lactatifermentans
Caproicibacterium sp. BJN0003 16 0 0 4 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Caproicibacterium Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Caproicibacterium;Caproicibacterium sp. BJN0003
Dysosmobacter welbionis 156 0 0 42 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Dysosmobacter Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Dysosmobacter;Dysosmobacter welbionis
Ethanoligenens harbinense 12 0 0 5 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Ethanoligenens Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Ethanoligenens;Ethanoligenens harbinense
Faecalibacterium duncaniae 526 796 62 448 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Faecalibacterium;Faecalibacterium duncaniae
Faecalibacterium prausnitzii 1655 2397 5655 3396 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Faecalibacterium;Faecalibacterium prausnitzii
Faecalibacterium sp. HTF-F 893 1336 109 754 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Faecalibacterium;Faecalibacterium sp. HTF-F
Faecalibacterium sp. I2-3-92 331 18 28 98 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Faecalibacterium;Faecalibacterium sp. I2-3-92
Faecalibacterium sp. I3-3-33 455 22 42 164 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Faecalibacterium;Faecalibacterium sp. I3-3-33
Faecalibacterium sp. I3-3-89 360 19 49 120 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Faecalibacterium;Faecalibacterium sp. I3-3-89
Faecalibacterium sp. I4-1-79 330 17 28 109 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Faecalibacterium;Faecalibacterium sp. I4-1-79
Faecalibacterium sp. I4-3-84 379 106 274 222 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Faecalibacterium;Faecalibacterium sp. I4-3-84
Faecalibacterium sp. IP-1-18 149 0 9 38 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Faecalibacterium;Faecalibacterium sp. IP-1-18
Faecalibacterium sp. IP-3-29 209 16 30 70 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Faecalibacterium;Faecalibacterium sp. IP-3-29
Faecalibacterium taiwanense 284 284 615 386 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Faecalibacterium;Faecalibacterium taiwanense
Flavonifractor plautii 420 0 0 109 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Flavonifractor Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Flavonifractor;Flavonifractor plautii
Lawsonibacter asaccharolyticus 178 0 0 41 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Lawsonibacter Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Lawsonibacter;Lawsonibacter asaccharolyticus
Oscillibacter hominis 121 0 0 32 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Oscillibacter Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Oscillibacter;Oscillibacter hominis
Oscillibacter sp. PEA192 108 25 0 35 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Oscillibacter Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Oscillibacter;Oscillibacter sp. PEA192
Paludicola sp. MB14-C6 41 0 0 6 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Paludihabitans Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Paludihabitans;Paludicola sp. MB14-C6
Pusillibacter faecalis 128 0 0 34 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Pusillibacter Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Pusillibacter;Pusillibacter faecalis
Ruminococcus albus 0 10 14 11 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Ruminococcus;Ruminococcus albus
Ruminococcus bicirculans (ex Wegman et al. 2014) 1426 2099 5269 3106 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Ruminococcus;Ruminococcus bicirculans (ex Wegman et al. 2014)
Ruminococcus bovis 52 0 0 8 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Ruminococcus;Ruminococcus bovis
Ruminococcus champanellensis 92 0 0 28 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Ruminococcus;Ruminococcus champanellensis
Ruminococcus gauvreauii 23 0 0 9 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Ruminococcus;Ruminococcus gauvreauii
Ruminococcus sp. SR1/5 211 8 0 70 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Ruminococcus;Ruminococcus sp. SR1/5
Ruthenibacterium lactatiformans 150 0 0 41 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Ruthenibacterium Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Ruthenibacterium;Ruthenibacterium lactatiformans
Solibaculum mannosilyticum 36 0 0 13 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Solibaculum Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Solibaculum;Solibaculum mannosilyticum
Subdoligranulum variabile 331 0 13 82 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Subdoligranulum Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Subdoligranulum;Subdoligranulum variabile
Subdoligranulum_uncultured 148 43 62 74 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Subdoligranulum Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Subdoligranulum;Subdoligranulum_uncultured
Thermocaproicibacter melissae 19 0 0 6 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Thermocaproicibacter Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Thermocaproicibacter;Thermocaproicibacter melissae
Vescimonas coprocola 371 0 0 103 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Vescimonas Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Vescimonas;Vescimonas coprocola
Vescimonas fastidiosa 314 0 0 93 Bacteria Bacteria_none Bacillota Clostridia Eubacteriales Oscillospiraceae Vescimonas Bacteria;Bacteria_none;Bacillota;Clostridia;Eubacteriales;Oscillospiraceae;Vescimonas;Vescimonas fastidiosa
Agathobacter rectalis 1160 1557 45 887 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Agathobacter Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Agathobacter;Agathobacter rectalis
Anaerobutyricum hallii 1587 2245 5473 3305 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Anaerobutyricum Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Anaerobutyricum;Anaerobutyricum hallii
Anaerocolumna cellulosilytica 22 0 0 4 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Anaerocolumna Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Anaerocolumna;Anaerocolumna cellulosilytica
Anaerocolumna chitinilytica 40 0 0 6 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Anaerocolumna Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Anaerocolumna;Anaerocolumna chitinilytica
Anaerocolumna sedimenticola 35 0 0 10 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Anaerocolumna Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Anaerocolumna;Anaerocolumna sedimenticola
Anaerocolumna sp. AGMB13025 15 0 0 5 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Anaerocolumna Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Anaerocolumna;Anaerocolumna sp. AGMB13025
Anaerocolumna sp. MB42-C2 11 0 0 5 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Anaerocolumna Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Anaerocolumna;Anaerocolumna sp. MB42-C2
Anaeromicropila herbilytica 20 0 0 6 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Anaeromicropila Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Anaeromicropila;Anaeromicropila herbilytica
Anaerostipes caccae 17 0 0 3 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Anaerostipes Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Anaerostipes;Anaerostipes caccae
Anaerostipes hadrus 983 1369 28 773 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Anaerostipes Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Anaerostipes;Anaerostipes hadrus
Anaerostipes rhamnosivorans 32 0 0 8 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Anaerostipes Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Anaerostipes;Anaerostipes rhamnosivorans
Blautia argi 282 8 0 75 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Blautia;Blautia argi
Blautia coccoides 22 22 0 9 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Blautia;Blautia coccoides
Blautia hydrogenotrophica 40 15 11 24 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Blautia;Blautia hydrogenotrophica
Blautia liquoris 30 0 0 7 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Blautia;Blautia liquoris
Blautia luti 215 163 75 128 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Blautia;Blautia luti
Blautia obeum 100 56 10 46 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Blautia;Blautia obeum
Blautia parvula 86 0 0 29 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Blautia;Blautia parvula
Blautia producta 105 0 0 24 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Blautia;Blautia producta
Blautia pseudococcoides 77 0 0 27 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Blautia;Blautia pseudococcoides
Blautia sp. SC05B48 728 967 0 559 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Blautia;Blautia sp. SC05B48
Blautia wexlerae 25 18 0 15 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Blautia;Blautia wexlerae
Butyrivibrio crossotus 117 0 0 28 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Butyrivibrio Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Butyrivibrio;Butyrivibrio crossotus
Butyrivibrio fibrisolvens 49 9 0 13 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Butyrivibrio Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Butyrivibrio;Butyrivibrio fibrisolvens
Butyrivibrio hungatei 26 0 0 5 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Butyrivibrio Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Butyrivibrio;Butyrivibrio hungatei
Chordicoccus furentiruminis 23 0 0 6 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Chordicoccus Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Chordicoccus;Chordicoccus furentiruminis
Claveliimonas bilis 49 0 0 11 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Claveliimonas Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Claveliimonas;Claveliimonas bilis
Coprococcus catus 265 9 0 77 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Coprococcus Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Coprococcus;Coprococcus catus
Coprococcus comes 646 923 0 503 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Coprococcus Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Coprococcus;Coprococcus comes
Coprococcus eutactus 157 0 0 39 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Coprococcus Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Coprococcus;Coprococcus eutactus
Coprococcus sp. ART55/1 82 0 0 20 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Coprococcus Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Coprococcus;Coprococcus sp. ART55/1
Dorea formicigenerans 392 11 0 116 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Dorea Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Dorea;Dorea formicigenerans
Dorea longicatena 1178 1707 0 927 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Dorea Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Dorea;Dorea longicatena
Enterocloster asparagiformis 17 0 10 7 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Enterocloster Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Enterocloster;Enterocloster asparagiformis
Enterocloster bolteae 177 8 0 49 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Enterocloster Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Enterocloster;Enterocloster bolteae
Enterocloster clostridioformis 73 0 0 23 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Enterocloster Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Enterocloster;Enterocloster clostridioformis
Herbinix luporum 11 0 0 1 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Herbinix Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Herbinix;Herbinix luporum
Hungatella hathewayi 57 0 0 17 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Hungatella Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Hungatella;Hungatella hathewayi
Kineothrix sp. IPX-CK 14 7 0 9 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Kineothrix Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Kineothrix;Kineothrix sp. IPX-CK
Kineothrix sp. MB12-C1 26 0 0 7 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Kineothrix Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Kineothrix;Kineothrix sp. MB12-C1
Lachnoanaerobaculum gingivalis 21 0 0 9 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnoanaerobaculum Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Lachnoanaerobaculum;Lachnoanaerobaculum gingivalis
Lachnoclostridium phocaeense 75 0 0 14 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnoclostridium Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Lachnoclostridium;Lachnoclostridium phocaeense
[Clostridium] hylemonae 65 0 0 18 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnoclostridium Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Lachnoclostridium;[Clostridium] hylemonae
[Clostridium] scindens 253 56 18 71 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnoclostridium Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Lachnoclostridium;[Clostridium] scindens
Lachnospira eligens 1872 2761 6791 3999 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnospira Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Lachnospira;Lachnospira eligens
Lacrimispora saccharolytica 34 0 0 8 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Lacrimispora Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Lacrimispora;Lacrimispora saccharolytica
Lacrimispora xylanolytica 28 0 0 10 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Lacrimispora Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Lacrimispora;Lacrimispora xylanolytica
Marvinbryantia formatexigens 11 0 0 1 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Marvinbryantia Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Marvinbryantia;Marvinbryantia formatexigens
Mediterraneibacter gnavus 680 974 0 513 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Mediterraneibacter Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Mediterraneibacter;Mediterraneibacter gnavus
[Ruminococcus] lactaris 0 10 0 2 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Mediterraneibacter Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Mediterraneibacter;[Ruminococcus] lactaris
[Ruminococcus] torques 93 68 15 62 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Mediterraneibacter Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Mediterraneibacter;[Ruminococcus] torques
Novisyntrophococcus fermenticellae 50 0 0 17 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Novisyntrophococcus Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Novisyntrophococcus;Novisyntrophococcus fermenticellae
Pseudobutyrivibrio xylanivorans 34 0 0 10 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Pseudobutyrivibrio Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Pseudobutyrivibrio;Pseudobutyrivibrio xylanivorans
Qiania dongpingensis 49 0 0 12 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Qiania Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Qiania;Qiania dongpingensis
Roseburia hominis 951 1337 0 714 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Roseburia Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Roseburia;Roseburia hominis
Roseburia intestinalis 677 978 0 558 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Roseburia Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Roseburia;Roseburia intestinalis
Roseburia rectibacter 227 18 0 75 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Roseburia Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Roseburia;Roseburia rectibacter
Roseburia sp. 499 69 53 10 45 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Roseburia Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Roseburia;Roseburia sp. 499
Roseburia sp. 831b 99 79 22 78 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Roseburia Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Roseburia;Roseburia sp. 831b
Sellimonas intestinalis 65 0 0 14 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Sellimonas Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Sellimonas;Sellimonas intestinalis
Simiaoa sunii 680 1046 0 564 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Simiaoa Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Simiaoa;Simiaoa sunii
Stomatobaculum sp. F0698 15 0 0 2 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Stomatobaculum Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Stomatobaculum;Stomatobaculum sp. F0698
Wansuia hejianensis 73 0 0 24 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Wansuia Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Wansuia;Wansuia hejianensis
Wujia chipingensis 44 0 0 12 Bacteria Bacteria_none Bacillota Clostridia Lachnospirales Lachnospiraceae Wujia Bacteria;Bacteria_none;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Wujia;Wujia chipingensis
Monoglobus pectinilyticus 281 0 0 72 Bacteria Bacteria_none Bacillota Clostridia Monoglobales Monoglobaceae Monoglobus Bacteria;Bacteria_none;Bacillota;Clostridia;Monoglobales;Monoglobaceae;Monoglobus;Monoglobus pectinilyticus
Aminipila luticellarii 11 0 0 4 Bacteria Bacteria_none Bacillota Clostridia Peptostreptococcales Anaerovoracaceae Aminipila Bacteria;Bacteria_none;Bacillota;Clostridia;Peptostreptococcales;Anaerovoracaceae;Aminipila;Aminipila luticellarii
Emergencia timonensis 12 0 0 2 Bacteria Bacteria_none Bacillota Clostridia Peptostreptococcales Anaerovoracaceae Emergencia Bacteria;Bacteria_none;Bacillota;Clostridia;Peptostreptococcales;Anaerovoracaceae;Emergencia;Emergencia timonensis
Clostridioides difficile 173 22 0 68 Bacteria Bacteria_none Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Clostridioides Bacteria;Bacteria_none;Bacillota;Clostridia;Peptostreptococcales;Peptostreptococcaceae;Clostridioides;Clostridioides difficile
Intestinibacter bartlettii 38 7 0 20 Bacteria Bacteria_none Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Intestinibacter Bacteria;Bacteria_none;Bacillota;Clostridia;Peptostreptococcales;Peptostreptococcaceae;Intestinibacter;Intestinibacter bartlettii
Paraclostridium sordellii 11 0 0 4 Bacteria Bacteria_none Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Paraclostridium Bacteria;Bacteria_none;Bacillota;Clostridia;Peptostreptococcales;Peptostreptococcaceae;Paraclostridium;Paraclostridium sordellii
Romboutsia ilealis 128 0 0 32 Bacteria Bacteria_none Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Romboutsia Bacteria;Bacteria_none;Bacillota;Clostridia;Peptostreptococcales;Peptostreptococcaceae;Romboutsia;Romboutsia ilealis
Romboutsia sp. 13368 13 0 0 5 Bacteria Bacteria_none Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Romboutsia Bacteria;Bacteria_none;Bacillota;Clostridia;Peptostreptococcales;Peptostreptococcaceae;Romboutsia;Romboutsia sp. 13368
Romboutsia sp. CE17 11 0 0 5 Bacteria Bacteria_none Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Romboutsia Bacteria;Bacteria_none;Bacillota;Clostridia;Peptostreptococcales;Peptostreptococcaceae;Romboutsia;Romboutsia sp. CE17
Faecalibacillus intestinalis 608 810 0 475 Bacteria Bacteria_none Bacillota Erysipelotrichia Erysipelotrichales Coprobacillaceae Faecalibacillus Bacteria;Bacteria_none;Bacillota;Erysipelotrichia;Erysipelotrichales;Coprobacillaceae;Faecalibacillus;Faecalibacillus intestinalis
Thomasclavelia ramosa 32 0 0 6 Bacteria Bacteria_none Bacillota Erysipelotrichia Erysipelotrichales Coprobacillaceae Thomasclavelia Bacteria;Bacteria_none;Bacillota;Erysipelotrichia;Erysipelotrichales;Coprobacillaceae;Thomasclavelia;Thomasclavelia ramosa
Amedibacterium intestinale 15 0 0 6 Bacteria Bacteria_none Bacillota Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Amedibacterium Bacteria;Bacteria_none;Bacillota;Erysipelotrichia;Erysipelotrichales;Erysipelotrichaceae;Amedibacterium;Amedibacterium intestinale
[Clostridium] innocuum 91 0 0 27 Bacteria Bacteria_none Bacillota Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Erysipelotrichaceae_Incertae_sedis Bacteria;Bacteria_none;Bacillota;Erysipelotrichia;Erysipelotrichales;Erysipelotrichaceae;Erysipelotrichaceae_Incertae_sedis;[Clostridium] innocuum
Turicibacter bilis 38 0 0 10 Bacteria Bacteria_none Bacillota Erysipelotrichia Erysipelotrichales Turicibacteraceae Turicibacter Bacteria;Bacteria_none;Bacillota;Erysipelotrichia;Erysipelotrichales;Turicibacteraceae;Turicibacter;Turicibacter bilis
Turicibacter sanguinis 10 0 0 3 Bacteria Bacteria_none Bacillota Erysipelotrichia Erysipelotrichales Turicibacteraceae Turicibacter Bacteria;Bacteria_none;Bacillota;Erysipelotrichia;Erysipelotrichales;Turicibacteraceae;Turicibacter;Turicibacter sanguinis
Phascolarctobacterium faecium 389 0 0 118 Bacteria Bacteria_none Bacillota Negativicutes Acidaminococcales Acidaminococcaceae Phascolarctobacterium Bacteria;Bacteria_none;Bacillota;Negativicutes;Acidaminococcales;Acidaminococcaceae;Phascolarctobacterium;Phascolarctobacterium faecium
Megamonas funiformis 1054 1604 0 850 Bacteria Bacteria_none Bacillota Negativicutes Selenomonadales Selenomonadaceae Megamonas Bacteria;Bacteria_none;Bacillota;Negativicutes;Selenomonadales;Selenomonadaceae;Megamonas;Megamonas funiformis
Selenomonas sputigena 13 0 0 5 Bacteria Bacteria_none Bacillota Negativicutes Selenomonadales Selenomonadaceae Selenomonas Bacteria;Bacteria_none;Bacillota;Negativicutes;Selenomonadales;Selenomonadaceae;Selenomonas;Selenomonas sputigena
Dialister succinatiphilus 12 0 0 3 Bacteria Bacteria_none Bacillota Negativicutes Veillonellales Veillonellaceae Dialister Bacteria;Bacteria_none;Bacillota;Negativicutes;Veillonellales;Veillonellaceae;Dialister;Dialister succinatiphilus
Parvimonas micra 13 0 0 1 Bacteria Bacteria_none Bacillota Tissierellia Tissierellales Peptoniphilaceae Parvimonas Bacteria;Bacteria_none;Bacillota;Tissierellia;Tissierellales;Peptoniphilaceae;Parvimonas;Parvimonas micra
Peptoniphilus genitalis 15 0 0 3 Bacteria Bacteria_none Bacillota Tissierellia Tissierellales Peptoniphilaceae Peptoniphilus Bacteria;Bacteria_none;Bacillota;Tissierellia;Tissierellales;Peptoniphilaceae;Peptoniphilus;Peptoniphilus genitalis
Dissulfurimicrobium hydrothermale 10 0 0 5 Bacteria Bacteria_none Bacteria_none_none Deltaproteobacteria Deltaproteobacteria_Incertae_sedis Deltaproteobacteria_Incertae_sedis Dissulfurimicrobium Bacteria;Bacteria_none;Bacteria_none_none;Deltaproteobacteria;Deltaproteobacteria_Incertae_sedis;Deltaproteobacteria_Incertae_sedis;Dissulfurimicrobium;Dissulfurimicrobium hydrothermale
Bacteroides caccae 76 9 0 27 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides caccae
Bacteroides caecimuris 22 0 0 8 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides caecimuris
Bacteroides cellulosilyticus 1270 1913 0 1030 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides cellulosilyticus
Bacteroides eggerthii 68 0 0 11 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides eggerthii
Bacteroides faecis 1280 1973 0 1038 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides faecis
Bacteroides faecium 16 0 0 9 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides faecium
Bacteroides finegoldii 254 47 12 81 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides finegoldii
Bacteroides fragilis 217 12 11 78 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides fragilis
Bacteroides heparinolyticus 16 0 0 3 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides heparinolyticus
Bacteroides humanifaecis 137 0 0 44 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides humanifaecis
Bacteroides intestinalis 18 16 0 11 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides intestinalis
Bacteroides luhongzhouii 16 0 0 3 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides luhongzhouii
Bacteroides nordii 12 0 0 6 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides nordii
Bacteroides ovatus 986 1500 0 784 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides ovatus
Bacteroides salyersiae 420 0 0 101 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides salyersiae
Bacteroides sp. A1C1 50 0 0 16 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides sp. A1C1
Bacteroides sp. CACC 737 47 0 0 16 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides sp. CACC 737
Bacteroides sp. D2 50 0 0 15 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides sp. D2
Bacteroides sp. DH3716P 22 0 0 10 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides sp. DH3716P
Bacteroides sp. HF-162 17 0 0 4 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides sp. HF-162
Bacteroides sp. M10 28 0 0 6 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides sp. M10
Bacteroides sp. MSB163 16 11 0 7 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides sp. MSB163
Bacteroides stercoris 36 0 0 10 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides stercoris
Bacteroides thetaiotaomicron 344 38 31 123 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides thetaiotaomicron
Bacteroides uniformis 1114 1758 0 928 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides uniformis
Bacteroides xylanisolvens 544 872 17 464 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides xylanisolvens
Bacteroides zhangwenhongii 28 0 0 8 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides zhangwenhongii
Bacteroides_uncultured 0 6 8 5 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;Bacteroides_uncultured
Phocaeicola coprophilus 12 0 0 2 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Phocaeicola Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Phocaeicola;Phocaeicola coprophilus
Phocaeicola dorei 2285 3460 8150 4931 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Phocaeicola Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Phocaeicola;Phocaeicola dorei
Phocaeicola vulgatus 5109 7961 19018 11273 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Phocaeicola Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Phocaeicola;Phocaeicola vulgatus
Butyricimonas faecalis 73 0 0 24 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Odoribacteraceae Butyricimonas Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Odoribacteraceae;Butyricimonas;Butyricimonas faecalis
Butyricimonas faecihominis 12 0 0 1 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Odoribacteraceae Butyricimonas Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Odoribacteraceae;Butyricimonas;Butyricimonas faecihominis
Butyricimonas virosa 48 0 0 8 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Odoribacteraceae Butyricimonas Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Odoribacteraceae;Butyricimonas;Butyricimonas virosa
Odoribacter splanchnicus 252 0 0 69 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Odoribacteraceae Odoribacter Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Odoribacteraceae;Odoribacter;Odoribacter splanchnicus
Alistipes communis 85 0 0 20 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Alistipes Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Rikenellaceae;Alistipes;Alistipes communis
Alistipes dispar 35 0 0 5 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Alistipes Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Rikenellaceae;Alistipes;Alistipes dispar
Alistipes finegoldii 33 0 0 6 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Alistipes Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Rikenellaceae;Alistipes;Alistipes finegoldii
Alistipes onderdonkii 108 0 0 28 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Alistipes Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Rikenellaceae;Alistipes;Alistipes onderdonkii
Alistipes senegalensis 40 0 0 15 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Alistipes Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Rikenellaceae;Alistipes;Alistipes senegalensis
Alistipes_uncultured 36 10 26 24 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Alistipes Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Rikenellaceae;Alistipes;Alistipes_uncultured
Parabacteroides distasonis 909 1476 0 769 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Parabacteroides Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Tannerellaceae;Parabacteroides;Parabacteroides distasonis
Parabacteroides goldsteinii 30 0 0 6 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Parabacteroides Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Tannerellaceae;Parabacteroides;Parabacteroides goldsteinii
Parabacteroides johnsonii 159 0 0 44 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Parabacteroides Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Tannerellaceae;Parabacteroides;Parabacteroides johnsonii
Parabacteroides merdae 180 0 0 45 Bacteria Bacteria_none Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Parabacteroides Bacteria;Bacteria_none;Bacteroidota;Bacteroidia;Bacteroidales;Tannerellaceae;Parabacteroides;Parabacteroides merdae
Komagataeibacter oboediens 38 0 0 10 Bacteria Bacteria_none Pseudomonadota Alphaproteobacteria Rhodospirillales Acetobacteraceae Komagataeibacter Bacteria;Bacteria_none;Pseudomonadota;Alphaproteobacteria;Rhodospirillales;Acetobacteraceae;Komagataeibacter;Komagataeibacter oboediens
Sutterella wadsworthensis 73 0 0 18 Bacteria Bacteria_none Pseudomonadota Betaproteobacteria Burkholderiales Sutterellaceae Sutterella Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales;Sutterellaceae;Sutterella;Sutterella wadsworthensis
Turicimonas muris 18 0 0 4 Bacteria Bacteria_none Pseudomonadota Betaproteobacteria Burkholderiales Sutterellaceae Turicimonas Bacteria;Bacteria_none;Pseudomonadota;Betaproteobacteria;Burkholderiales;Sutterellaceae;Turicimonas;Turicimonas muris
Escherichia coli 84 0 0 25 Bacteria Bacteria_none Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Escherichia;Escherichia coli
Klebsiella grimontii 30 0 0 5 Bacteria Bacteria_none Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella;Klebsiella grimontii
Legionella cardiaca 13 0 0 4 Bacteria Bacteria_none Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Bacteria;Bacteria_none;Pseudomonadota;Gammaproteobacteria;Legionellales;Legionellaceae;Legionella;Legionella cardiaca
Treponema vincentii 10 0 0 2 Bacteria Bacteria_none Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Bacteria;Bacteria_none;Spirochaetota;Spirochaetia;Spirochaetales;Treponemataceae;Treponema;Treponema vincentii
Desulfovibrio fairfieldensis 13 0 0 6 Bacteria Bacteria_none Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Bacteria;Bacteria_none;Thermodesulfobacteriota;Desulfovibrionia;Desulfovibrionales;Desulfovibrionaceae;Desulfovibrio;Desulfovibrio fairfieldensis
Desulfovibrio sp. G11 12 0 0 3 Bacteria Bacteria_none Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Bacteria;Bacteria_none;Thermodesulfobacteriota;Desulfovibrionia;Desulfovibrionales;Desulfovibrionaceae;Desulfovibrio;Desulfovibrio sp. G11
Akkermansia massiliensis 27 0 0 8 Bacteria Bacteria_none Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Bacteria;Bacteria_none;Verrucomicrobiota;Verrucomicrobiia;Verrucomicrobiales;Akkermansiaceae;Akkermansia;Akkermansia massiliensis
Akkermansia muciniphila 762 1094 0 597 Bacteria Bacteria_none Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Bacteria;Bacteria_none;Verrucomicrobiota;Verrucomicrobiia;Verrucomicrobiales;Akkermansiaceae;Akkermansia;Akkermansia muciniphila
Homo sapiens 699 1033 11 558 Eukaryota Metazoa Chordata Mammalia Primates Hominidae Homo Eukaryota;Metazoa;Chordata;Mammalia;Primates;Hominidae;Homo;Homo sapiens
Unknown 3865 2815 66 2109 Unclassified Unknown Unknown Unknown Unknown Unknown Unknown Unclassified;Unknown;Unknown;Unknown;Unknown;Unknown;Unknown;Unknown

Alpha Diversity

Sample diversity indices. Indices are calculated from the original abundance table.

Indices barcode01 barcode02 barcode03 total
Berger Parker index 0.1 0.15 0.36 0.22
Effective number of species 68.16 26.07 6.26 27.3
Fisher's alpha 29.94 28.69 28.56 24.99
Inverse Simpson's index 1.03 1.06 1.26 1.09
Pielou's evenness 0.78 0.78 0.5 0.61
Richness 222.0 67.0 38.0 225.0
Shannon diversity index 4.22 3.26 1.83 3.31
Simpson's index 0.97 0.95 0.79 0.92
Total counts 54870.0 72967.0 75301.0 203138.0
Note that the taxon 'Unknown' is considered as a unique taxon.

Sample-based rarefaction curves to display observed taxa richness. Sample size shows the number of reads sampled from the total amount of reads analyzed during the real time analysis. The Y-axis indicates the number of unique taxa at the last analyzed taxonomic rank in those subsampled reads.

Note that Unknown taxon is considered as a unique taxon.
This plot includes all the counts (except Unknown), before applying any filter threshold based on abundances.
This plot includes all the counts (except Unknown), before applying any filter threshold based on abundances.
This plot includes all the counts (except Unknown), before applying any filter threshold based on abundances.

Software versions

Name Version
pysam 0.22.1
pandas 2.0.3
fastcat 0.20.0
minimap2 2.28-r1209
samtools 1.21
taxonkit v0.18.0
Kraken 2.1.3

Workflow parameters

Key Value
fastq wf-metagenomics/data/wf-metagenomics-demo/test_data/
bam None
classifier kraken2
sample None
sample_sheet None
exclude_host None
max_len None
min_len 0
min_read_qual None
threads 4
server_threads 2
kraken_clients 2
taxonomy None
reference None
ref2taxid None
database None
taxonomic_rank S
minimap2filter None
minimap2exclude False
keep_bam False
minimap2_by_reference False
min_percent_identity 90
min_ref_coverage 0
store_dir wf-metagenomics/store_dir
out_dir wf-metagenomics
include_read_assignments False
igv False
bracken_length None
bracken_threshold 10
port 8080
host localhost
external_kraken2 False
kraken2_memory_mapping False
kraken2_confidence 0
batch_size 0
real_time False
read_limit None
database_set Standard-8
database_sets {'ncbi_16s_18s': {'reference': 'https://ont-exd-int-s3-euwst1-epi2me-labs.s3.amazonaws.com/wf-metagenomics/ncbi_16s_18s/ncbi_targeted_loci_16s_18s.fna', 'database': 'https://ont-exd-int-s3-euwst1-epi2me-labs.s3.amazonaws.com/wf-metagenomics/ncbi_16s_18s/ncbi_targeted_loci_kraken2.tar.gz', 'ref2taxid': 'https://ont-exd-int-s3-euwst1-epi2me-labs.s3.amazonaws.com/wf-metagenomics/ncbi_16s_18s/ref2taxid.targloci.tsv', 'taxonomy': 'https://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdump_archive/new_taxdump_2024-09-01.zip'}, 'ncbi_16s_18s_28s_ITS': {'reference': 'https://ont-exd-int-s3-euwst1-epi2me-labs.s3.amazonaws.com/wf-metagenomics/ncbi_16s_18s_28s_ITS/ncbi_16s_18s_28s_ITS.fna', 'database': 'https://ont-exd-int-s3-euwst1-epi2me-labs.s3.amazonaws.com/wf-metagenomics/ncbi_16s_18s_28s_ITS/ncbi_16s_18s_28s_ITS_kraken2.tar.gz', 'ref2taxid': 'https://ont-exd-int-s3-euwst1-epi2me-labs.s3.amazonaws.com/wf-metagenomics/ncbi_16s_18s_28s_ITS/ref2taxid.ncbi_16s_18s_28s_ITS.tsv', 'taxonomy': 'https://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdump_archive/new_taxdump_2024-09-01.zip'}, 'SILVA_138_1': {'database': None}, 'Standard-8': {'database': 'https://genome-idx.s3.amazonaws.com/kraken/k2_standard_08gb_20240605.tar.gz', 'taxonomy': 'https://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdump_archive/new_taxdump_2024-09-01.zip'}, 'PlusPF-8': {'database': 'https://genome-idx.s3.amazonaws.com/kraken/k2_pluspf_08gb_20240605.tar.gz', 'taxonomy': 'https://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdump_archive/new_taxdump_2024-09-01.zip'}, 'PlusPFP-8': {'database': 'https://genome-idx.s3.amazonaws.com/kraken/k2_pluspfp_08gb_20240605.tar.gz', 'taxonomy': 'https://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdump_archive/new_taxdump_2024-09-01.zip'}}
amr False
amr_db resfinder
amr_minid 80
amr_mincov 80
analyse_unclassified False
abundance_threshold 0
n_taxa_barplot 9