wf-mpx Sequencing Report

Results generated through the wf-mpx Nextflow workflow provided by Oxford Nanopore Technologies.

RUO

Preamble

This workflow is intended to assemble a draft consensus Monkeypox virus (MPXV) genome from Oxford Nanopore Technologies Sequencing data.

The rough outline of this workflow:

Assembled consensus sequences are masked ('N') in regions of <20x coverage, deletions are represented as "-", and insertions are in lower case. Resulting assemblies will require manual review.

Read summary

The following tables and figures are derived from the output of fastcat.

Nextclade results

Reference-based assembly

clade coverage overall_qc
IIb 0.995954 mediocre

De novo assembly

Clade typing was unsuccessful.

index seqName errors
0 contig_4 [Unable to align: low seed matching rate. Details: number of seeds: 394, number of seed matches: 3, matching rate: 0.008, required matching rate: 0.300. This is likely due to a low quality of the provided sequence, or due to using incorrect reference sequence.]
4 contig_2 [Unable to align: low seed matching rate. Details: number of seeds: 394, number of seed matches: 2, matching rate: 0.005, required matching rate: 0.300. This is likely due to a low quality of the provided sequence, or due to using incorrect reference sequence.]
1 contig_5 [Unable to align: low seed matching rate. Details: number of seeds: 394, number of seed matches: 108, matching rate: 0.274, required matching rate: 0.300. This is likely due to a low quality of the provided sequence, or due to using incorrect reference sequence.]
2 contig_1 [Unable to align: low seed matching rate. Details: number of seeds: 394, number of seed matches: 5, matching rate: 0.013, required matching rate: 0.300. This is likely due to a low quality of the provided sequence, or due to using incorrect reference sequence.]
3 contig_3 [Unable to align: low seed matching rate. Details: number of seeds: 394, number of seed matches: 2, matching rate: 0.005, required matching rate: 0.300. This is likely due to a low quality of the provided sequence, or due to using incorrect reference sequence.]

Genome coverage

The plot below shows read depth across the whole genome, annotated with variants in the reference-based assembly called by Medaka. Dots represent single nucleotide polymorphisms, while bars represent insertions and deletions.

Mutational spectrum

Evidence of APOBEC3 host enzyme editing has been observed in Monkeypox virus (MPXV), as described in this virological.org post by Áine O’Toole & Andrew Rambaut. The mutational spectrum of the reference-based assembly is shown below.

All variants

The following table shows variants in the reference-based assembly called by Medaka with respect to the chosen reference sequence.

chromosome start end quality reference alternate is_indel DP DPS width context
NC_003310.1 165 166 45.354 C T False 22 10,12 1 CA>TA
NC_003310.1 241 242 39.170 C A False 26 14,12 1 CG>AG
NC_003310.1 503 504 49.968 C T False 39 18,21 1 CA>TA
NC_003310.1 512 513 57.623 A G False 39 18,21 1 AT>GT
NC_003310.1 629 637 224.876 A ATTTTTTT True 43 20,23 8 NA
NC_003310.1 643 645 29.941 C CT True 43 20,23 2 NA
NC_003310.1 656 657 181.443 AAGAGAGA C True 43 20,23 1 AA>CA
NC_003310.1 753 754 55.913 C T False 56 25,31 1 CA>TA
NC_003310.1 782 783 60.486 A G False 56 25,31 1 AC>GC
NC_003310.1 788 789 60.171 TACA T True 56 25,31 1 TA>TA
NC_003310.1 1030 1031 60.486 A G False 80 40,40 1 AA>GA
NC_003310.1 1129 1130 61.108 G A False 81 41,40 1 GC>AC
NC_003310.1 1237 1238 58.630 T C False 92 46,46 1 TG>CG
NC_003310.1 1298 1299 61.833 G A False 95 47,48 1 GA>AA
NC_003310.1 1345 1346 57.334 G A False 100 48,52 1 GC>AC
NC_003310.1 1540 1541 61.833 G A False 104 49,55 1 GG>AG
NC_003310.1 1723 1724 56.337 G A False 111 52,59 1 GG>AG
NC_003310.1 1726 1727 50.372 TAA T True 111 52,59 1 TA>TA
NC_003310.1 1851 1853 116.279 CG AT True 116 55,61 2 NA
NC_003310.1 2124 2125 61.108 G T False 124 61,63 1 GG>TG
NC_003310.1 2274 2278 171.824 T TACG True 127 62,65 4 NA
NC_003310.1 2426 2427 61.108 A C False 131 63,68 1 AT>CT
NC_003310.1 2589 2590 63.796 C T False 135 65,70 1 CG>TG
NC_003310.1 2626 2627 58.268 G A False 136 65,71 1 GA>AA
NC_003310.1 2694 2695 52.562 T C False 136 65,71 1 TT>CT
NC_003310.1 2723 2724 63.796 A T False 139 66,73 1 AA>TA
NC_003310.1 2797 2798 49.968 TA T True 140 67,73 1 TA>TA
NC_003310.1 3135 3136 61.833 G T False 157 75,82 1 GG>TG
NC_003310.1 3147 3148 63.796 G A False 157 75,82 1 GA>AA
NC_003310.1 3179 3180 59.460 T C False 156 75,81 1 TG>CG
NC_003310.1 3456 3457 67.476 G A False 153 74,79 1 GA>AA
NC_003310.1 3486 3487 61.833 G A False 150 73,77 1 GA>AA
NC_003310.1 3558 3559 65.257 G A False 145 70,75 1 GA>AA
NC_003310.1 3854 3855 59.460 C T False 250 124,126 1 CA>TA
NC_003310.1 4078 4079 61.108 A G False 288 147,141 1 AC>GC
NC_003310.1 4633 4634 37.234 AT A True 326 161,165 1 AT>AT
NC_003310.1 4728 4729 47.102 A G False 357 174,183 1 AA>GA
NC_003310.1 4729 4941 2845.190 A ACTTAACTAA...(212) True 357 174,183 212 NA
NC_003310.1 4790 4791 61.833 G T False 377 191,186 1 GA>TA
NC_003310.1 5294 5295 52.953 T C False 503 250,253 1 TT>CT
NC_003310.1 5705 5706 65.257 A G False 528 264,264 1 AA>GA
NC_003310.1 5763 5764 58.630 T C False 529 267,262 1 TA>CA
NC_003310.1 6030 6031 63.796 G A False 529 269,260 1 GT>AT
NC_003310.1 6100 6101 67.476 G A False 529 269,260 1 GC>AC
NC_003310.1 6113 6114 63.796 C T False 529 269,260 1 CG>TG
NC_003310.1 6204 6205 11.445 AT A True 535 270,265 1 AT>AT
NC_003310.1 6384 6387 112.522 C CCT True 534 271,263 3 NA
NC_003310.1 6481 6482 32.632 GT G True 549 279,270 1 GT>GT
NC_003310.1 6859 6860 62.705 T C False 593 298,295 1 TC>CC
NC_003310.1 6921 6922 685.391 TTATCATTAT...(29) T True 564 284,280 1 TT>TT
NC_003310.1 6966 6967 48.500 GT G True 561 282,279 1 GT>GT
NC_003310.1 6989 6990 53.859 C T False 583 290,293 1 CA>TA
NC_003310.1 6999 7006 252.869 A ACTCTCG True 581 287,294 7 NA
NC_003310.1 7119 7124 229.110 C CATCT True 598 295,303 5 NA
NC_003310.1 7179 7180 67.476 A G False 598 294,304 1 AT>GT
NC_003310.1 7377 7379 54.844 C CT True 673 330,343 2 NA
NC_003310.1 7384 7385 67.476 C T False 673 330,343 1 CA>TA
NC_003310.1 7406 7407 108.132 ATAG A True 672 329,343 1 AT>AT
NC_003310.1 7624 7625 65.257 C T False 594 294,300 1 CG>TG
NC_003310.1 7747 7748 65.257 C T False 565 275,290 1 CG>TG
NC_003310.1 7786 7787 61.108 C T False 563 274,289 1 CA>TA
NC_003310.1 7926 7927 65.257 G T False 557 272,285 1 GG>TG
NC_003310.1 8023 8025 48.803 T TA True 557 272,285 2 NA
NC_003310.1 8041 8042 65.257 G A False 557 272,285 1 GC>AC
NC_003310.1 8252 8253 59.460 A G False 522 257,265 1 AT>GT
NC_003310.1 8261 8262 61.108 T C False 522 257,265 1 TT>CT
NC_003310.1 8299 8302 119.511 G GTT True 521 255,266 3 NA
NC_003310.1 8317 8318 56.337 A C False 521 255,266 1 AT>CT
NC_003310.1 8391 8396 229.145 C CATAT True 470 226,244 5 NA
NC_003310.1 8439 8441 62.705 T TA True 480 228,252 2 NA
NC_003310.1 8461 8463 55.004 A AT True 495 234,261 2 NA
NC_003310.1 8566 8567 368.618 GTATATATAT...(15) G True 523 251,272 1 GT>GT
NC_003310.1 8584 8585 49.087 A C False 517 248,269 1 AT>CT
NC_003310.1 8675 8676 53.614 G T False 516 248,268 1 GA>TA
NC_003310.1 8791 8792 63.796 G A False 527 256,271 1 GG>AG
NC_003310.1 8811 8812 65.257 G A False 534 260,274 1 GA>AA
NC_003310.1 8874 8875 67.476 C A False 535 260,275 1 CG>AG
NC_003310.1 8893 8895 55.345 A AT True 524 256,268 2 NA
NC_003310.1 8903 8904 63.796 C T False 524 256,268 1 CG>TG
NC_003310.1 8971 8973 61.108 A AT True 524 256,268 2 NA
NC_003310.1 9118 9119 65.257 A G False 520 255,265 1 AT>GT
NC_003310.1 9140 9141 61.833 G T False 519 254,265 1 GA>TA
NC_003310.1 9242 9243 50.944 CA C True 538 262,276 1 CA>CA
NC_003310.1 9261 9263 61.833 T TA True 556 273,283 2 NA
NC_003310.1 9355 9356 67.476 G A False 619 304,315 1 GA>AA
NC_003310.1 9383 9384 61.833 T C False 619 304,315 1 TC>CC
NC_003310.1 9420 9421 65.257 A G False 619 304,315 1 AC>GC
NC_003310.1 9488 9489 54.688 A T False 606 298,308 1 AT>TT
NC_003310.1 9501 9503 47.461 T TA True 606 298,308 2 NA
NC_003310.1 9541 9542 19.712 ATT A True 633 307,326 1 AT>AT
NC_003310.1 9678 9679 67.476 A G False 625 307,318 1 AT>GT
NC_003310.1 10222 10223 60.486 T C False 652 328,324 1 TA>CA
NC_003310.1 10247 10248 57.623 C A False 652 328,324 1 CC>AC
NC_003310.1 10255 10256 36.532 G A False 652 328,324 1 GA>AA
NC_003310.1 10411 10412 1511.680 CATTAGATTA...(66) C True 623 313,310 1 CA>CA
NC_003310.1 10686 10687 59.460 T C False 658 336,322 1 TC>CC
NC_003310.1 11037 11038 60.486 C T False 666 339,327 1 CT>TT
NC_003310.1 11142 11143 59.943 T A False 712 364,348 1 TT>AT
NC_003310.1 11484 11485 60.486 C T False 625 317,308 1 CT>TT
NC_003310.1 11638 11639 63.796 G A False 638 327,311 1 GC>AC
NC_003310.1 11669 11671 129.309 GT AC True 637 326,311 2 NA
NC_003310.1 12036 12037 61.108 G A False 573 287,286 1 GC>AC
NC_003310.1 12048 12049 65.257 G A False 573 287,286 1 GC>AC
NC_003310.1 12173 12174 59.943 A G False 483 242,241 1 AA>GA
NC_003310.1 12369 12370 60.486 A C False 412 209,203 1 AG>CG
NC_003310.1 12397 12398 63.796 G A False 412 209,203 1 GC>AC
NC_003310.1 12425 12426 61.833 G A False 412 209,203 1 GC>AC
NC_003310.1 12463 12464 63.796 G T False 412 209,203 1 GC>TC
NC_003310.1 12619 12620 62.705 A C False 394 203,191 1 AA>CA
NC_003310.1 12757 12758 60.486 G A False 367 188,179 1 GT>AT
NC_003310.1 12778 12779 67.476 G A False 346 176,170 1 GT>AT
NC_003310.1 13180 13181 58.268 C T False 305 147,158 1 CA>TA
NC_003310.1 13268 13269 45.354 A C False 285 141,144 1 AG>CG
NC_003310.1 13320 13322 44.125 T TA True 266 135,131 2 NA
NC_003310.1 13338 13339 395.864 ATTATAGTTT...(16) A True 266 135,131 1 AT>AT
NC_003310.1 13407 13408 65.257 A G False 266 135,131 1 AC>GC
NC_003310.1 13410 13412 62.705 A AT True 266 135,131 2 NA
NC_003310.1 14053 14054 58.268 C T False 153 84,69 1 CT>TT
NC_003310.1 14057 14059 120.101 TG GT True 153 84,69 2 NA
NC_003310.1 14149 14150 63.796 T C False 95 52,43 1 TT>CT
NC_003310.1 14489 14490 61.833 C T False 85 45,40 1 CG>TG
NC_003310.1 14705 14706 61.108 T C False 126 63,63 1 TT>CT
NC_003310.1 15267 15268 61.833 A C False 180 93,87 1 AT>CT
NC_003310.1 15339 15340 63.796 C T False 191 99,92 1 CG>TG
NC_003310.1 15486 15487 59.943 G A False 172 93,79 1 GA>AA
NC_003310.1 15603 15606 127.592 G GTA True 153 80,73 3 NA
NC_003310.1 15658 15659 61.108 A G False 152 79,73 1 AT>GT
NC_003310.1 15713 15714 34.029 T A False 152 79,73 1 TT>AT
NC_003310.1 15850 15851 62.705 C T False 157 81,76 1 CG>TG
NC_003310.1 15922 15924 53.497 T TA True 157 81,76 2 NA
NC_003310.1 15938 15939 59.943 A C False 157 81,76 1 AA>CA
NC_003310.1 16057 16058 59.943 T C False 151 77,74 1 TT>CT
NC_003310.1 16157 16158 67.476 A G False 151 77,74 1 AT>GT
NC_003310.1 16196 16197 59.943 T G False 153 79,74 1 TA>GA
NC_003310.1 16294 16295 59.943 C T False 149 77,72 1 CG>TG
NC_003310.1 16448 16449 62.705 G T False 150 77,73 1 GA>TA
NC_003310.1 16458 16459 109.922 GGTGT G True 150 77,73 1 GG>GG
NC_003310.1 16465 16466 58.630 G A False 150 77,73 1 GT>AT
NC_003310.1 16640 16641 62.705 A G False 150 78,72 1 AA>GA
NC_003310.1 16666 16673 367.606 T TGTCATC True 150 78,72 7 NA
NC_003310.1 16687 16688 61.108 G A False 151 80,71 1 GT>AT
NC_003310.1 16841 16842 65.257 G T False 155 80,75 1 GG>TG
NC_003310.1 17549 17550 54.539 T C False 216 111,105 1 TT>CT
NC_003310.1 17578 17579 61.833 A G False 243 122,121 1 AT>GT
NC_003310.1 17853 17854 62.705 C T False 238 118,120 1 CT>TT
NC_003310.1 18070 18071 63.796 T A False 293 153,140 1 TT>AT
NC_003310.1 18107 18111 182.080 T TACC True 282 148,134 4 NA
NC_003310.1 18157 18158 59.943 T C False 297 160,137 1 TA>CA
NC_003310.1 18362 18363 61.833 G A False 296 162,134 1 GA>AA
NC_003310.1 18528 18529 67.476 C A False 295 161,134 1 CT>AT
NC_003310.1 18640 18641 63.796 A G False 288 157,131 1 AT>GT
NC_003310.1 18911 18912 38.622 A T False 281 155,126 1 AT>TT
NC_003310.1 18951 18952 45210.000 CCGGCTGCCA...(1954) C True 263 146,117 1 CC>CC
NC_003310.1 20956 20957 57.334 C T False 326 174,152 1 CA>TA
NC_003310.1 21058 21059 59.943 C T False 326 174,152 1 CT>TT
NC_003310.1 21089 21090 62.705 G A False 326 174,152 1 GA>AA
NC_003310.1 21285 21286 61.108 G T False 326 174,152 1 GT>TT
NC_003310.1 21293 21294 61.833 C T False 326 174,152 1 CT>TT
NC_003310.1 21307 21308 61.108 T A False 326 174,152 1 TA>AA
NC_003310.1 21347 21348 14.145 ATT A True 327 174,153 1 AT>AT
NC_003310.1 21372 21373 63.796 C T False 328 175,153 1 CG>TG
NC_003310.1 21397 21398 65.257 C A False 328 175,153 1 CG>AG
NC_003310.1 21462 21463 63.796 C T False 328 175,153 1 CG>TG
NC_003310.1 21480 21481 61.833 G A False 328 175,153 1 GC>AC
NC_003310.1 21750 21751 63.796 T C False 386 201,185 1 TG>CG
NC_003310.1 22610 22611 63.796 G A False 356 186,170 1 GG>AG
NC_003310.1 22995 22996 65.257 T A False 322 168,154 1 TT>AT
NC_003310.1 23039 23040 62.705 G A False 327 170,157 1 GT>AT
NC_003310.1 23196 23197 57.623 G A False 276 139,137 1 GA>AA
NC_003310.1 23374 23375 63.796 A C False 283 142,141 1 AA>CA
NC_003310.1 23728 23729 62.705 G A False 315 154,161 1 GA>AA
NC_003310.1 24008 24009 61.833 T C False 373 184,189 1 TA>CA
NC_003310.1 24472 24473 89.415 ATATTTC A True 372 193,179 1 AT>AT
NC_003310.1 24586 24587 61.833 G T False 323 167,156 1 GC>TC
NC_003310.1 24939 24940 55.171 T C False 306 163,143 1 TT>CT
NC_003310.1 25091 25092 58.630 G T False 274 143,131 1 GG>TG
NC_003310.1 25177 25179 45.372 C CA True 268 141,127 2 NA
NC_003310.1 25186 25187 556.988 CGACAATAGT...(26) C True 268 141,127 1 CG>CG
NC_003310.1 25318 25319 61.108 T C False 266 140,126 1 TA>CA
NC_003310.1 25599 25600 65.257 C T False 282 148,134 1 CG>TG
NC_003310.1 25683 25684 56.807 T C False 282 148,134 1 TA>CA
NC_003310.1 26067 26068 67.476 G A False 277 149,128 1 GT>AT
NC_003310.1 26214 26215 59.943 C T False 277 148,129 1 CA>TA
NC_003310.1 26257 26258 61.833 C T False 275 146,129 1 CA>TA
NC_003310.1 26341 26343 62.705 T TA True 278 149,129 2 NA
NC_003310.1 26369 26371 61.833 A AC True 282 152,130 2 NA
NC_003310.1 26391 26392 67.476 G T False 282 152,130 1 GA>TA
NC_003310.1 26426 26427 67.476 T A False 262 138,124 1 TA>AA
NC_003310.1 26752 26753 63.796 C G False 195 101,94 1 CC>GC
NC_003310.1 26978 26979 60.486 T C False 176 91,85 1 TG>CG
NC_003310.1 27206 27207 63.796 G T False 266 130,136 1 GG>TG
NC_003310.1 27245 27246 62.705 T G False 269 131,138 1 TG>GG
NC_003310.1 27440 27441 59.943 G A False 247 123,124 1 GG>AG
NC_003310.1 27561 27562 57.334 T A False 263 129,134 1 TT>AT
NC_003310.1 27583 27584 110.774 TTTG T True 263 129,134 1 TT>TT
NC_003310.1 27697 27698 62.705 G A False 270 133,137 1 GA>AA
NC_003310.1 27805 27806 62.705 T G False 321 157,164 1 TT>GT
NC_003310.1 27813 27814 61.108 A G False 321 157,164 1 AG>GG
NC_003310.1 27892 27893 61.108 C T False 327 161,166 1 CG>TG
NC_003310.1 28452 28453 62.705 T C False 302 141,161 1 TG>CG
NC_003310.1 29143 29145 58.630 T TA True 288 136,152 2 NA
NC_003310.1 29250 29251 63.796 A G False 287 136,151 1 AC>GC
NC_003310.1 29363 29364 62.705 C T False 286 135,151 1 CA>TA
NC_003310.1 29649 29650 62.705 C T False 276 129,147 1 CA>TA
NC_003310.1 29727 29728 63.796 T C False 225 106,119 1 TA>CA
NC_003310.1 29984 29985 59.460 C T False 207 97,110 1 CA>TA
NC_003310.1 30125 30126 67.476 C A False 219 107,112 1 CA>AA
NC_003310.1 30313 30314 62.705 C T False 180 92,88 1 CC>TC
NC_003310.1 30450 30451 65.257 G A False 225 114,111 1 GC>AC
NC_003310.1 30566 30567 24.016 AT A True 203 101,102 1 AT>AT
NC_003310.1 30583 30584 59.025 G A False 202 100,102 1 GG>AG
NC_003310.1 30617 30637 970.978 T TATTATCCAG...(20) True 201 100,101 20 NA
NC_003310.1 30726 30727 52.753 T C False 175 85,90 1 TG>CG
NC_003310.1 31047 31048 65.257 C T False 173 85,88 1 CA>TA
NC_003310.1 31462 31463 50.694 T C False 194 96,98 1 TT>CT
NC_003310.1 31671 31672 62.705 C T False 198 100,98 1 CG>TG
NC_003310.1 31769 31770 30.839 C T False 198 100,98 1 CC>TC
NC_003310.1 31774 31775 30.356 C T False 198 100,98 1 CC>TC
NC_003310.1 31779 31780 394.552 CCCATCCCAT...(16) C True 198 100,98 1 CC>CC
NC_003310.1 31954 31955 63.796 A G False 227 121,106 1 AC>GC
NC_003310.1 32398 32399 60.486 G A False 232 126,106 1 GA>AA
NC_003310.1 32531 32532 61.833 T A False 218 115,103 1 TT>AT
NC_003310.1 32761 32762 61.108 T C False 199 107,92 1 TA>CA
NC_003310.1 32774 32775 63.796 A T False 199 107,92 1 AG>TG
NC_003310.1 32846 32847 62.705 A T False 199 107,92 1 AC>TC
NC_003310.1 32886 32887 65.257 A T False 199 107,92 1 AT>TT
NC_003310.1 33070 33071 61.833 A G False 219 122,97 1 AC>GC
NC_003310.1 33084 33085 63.796 G A False 219 122,97 1 GA>AA
NC_003310.1 33112 33113 61.833 T C False 219 122,97 1 TG>CG
NC_003310.1 33133 33134 55.715 G A False 218 122,96 1 GC>AC
NC_003310.1 33175 33176 65.257 A G False 224 122,102 1 AT>GT
NC_003310.1 33560 33561 63.796 T C False 208 113,95 1 TA>CA
NC_003310.1 33824 33825 57.062 A G False 209 114,95 1 AT>GT
NC_003310.1 33986 33987 63.796 A G False 206 112,94 1 AT>GT
NC_003310.1 34055 34056 63.796 A G False 180 101,79 1 AT>GT
NC_003310.1 34240 34244 184.225 T TGAC True 177 100,77 4 NA
NC_003310.1 34351 34352 63.796 G A False 197 111,86 1 GT>AT
NC_003310.1 34358 34359 60.486 C T False 197 111,86 1 CT>TT
NC_003310.1 34393 34394 65.257 A G False 198 112,86 1 AT>GT
NC_003310.1 34506 34507 59.460 C A False 190 108,82 1 CG>AG
NC_003310.1 34896 34897 63.796 C T False 219 122,97 1 CG>TG
NC_003310.1 35072 35073 63.796 C T False 200 105,95 1 CG>TG
NC_003310.1 35131 35132 61.833 A T False 215 113,102 1 AC>TC
NC_003310.1 35172 35173 65.257 C T False 215 113,102 1 CG>TG
NC_003310.1 35221 35223 59.025 T TA True 213 114,99 2 NA
NC_003310.1 35435 35437 51.794 A AT True 245 131,114 2 NA
NC_003310.1 35683 35684 56.119 C A False 234 127,107 1 CG>AG
NC_003310.1 35735 35736 62.705 C A False 234 127,107 1 CA>AA
NC_003310.1 35990 35991 65.257 C T False 242 132,110 1 CC>TC
NC_003310.1 36032 36033 62.705 T C False 243 133,110 1 TG>CG
NC_003310.1 36322 36323 63.796 G A False 246 128,118 1 GC>AC
NC_003310.1 36328 36329 61.833 C A False 252 133,119 1 CG>AG
NC_003310.1 36486 36487 63.796 G A False 288 150,138 1 GA>AA
NC_003310.1 36712 36713 65.257 C T False 295 153,142 1 CG>TG
NC_003310.1 36827 36828 63.796 A G False 301 154,147 1 AA>GA
NC_003310.1 36971 36972 62.705 A T False 322 167,155 1 AC>TC
NC_003310.1 37257 37258 65.257 A G False 331 172,159 1 AC>GC
NC_003310.1 37379 37380 61.108 A C False 317 166,151 1 AG>CG
NC_003310.1 37640 37641 65.257 G A False 301 151,150 1 GA>AA
NC_003310.1 37802 37803 61.108 A G False 297 152,145 1 AG>GG
NC_003310.1 38076 38077 63.796 C T False 296 151,145 1 CA>TA
NC_003310.1 38472 38473 67.476 A G False 218 108,110 1 AA>GA
NC_003310.1 39197 39198 59.025 T C False 226 106,120 1 TA>CA
NC_003310.1 39229 39230 43.365 G A False 223 106,117 1 GA>AA
NC_003310.1 39984 39985 61.833 A T False 184 84,100 1 AA>TA
NC_003310.1 40094 40095 62.705 G A False 183 83,100 1 GC>AC
NC_003310.1 40387 40388 61.108 G A False 154 72,82 1 GA>AA
NC_003310.1 40454 40455 61.108 T C False 154 72,82 1 TA>CA
NC_003310.1 40685 40686 61.833 A T False 141 63,78 1 AT>TT
NC_003310.1 40689 40690 62.705 C T False 141 63,78 1 CA>TA
NC_003310.1 41099 41100 16.479 A T False 187 91,96 1 AT>TT
NC_003310.1 41146 41147 60.486 C T False 186 91,95 1 CT>TT
NC_003310.1 41166 41167 62.705 C T False 185 90,95 1 CG>TG
NC_003310.1 41275 41276 63.796 C T False 184 90,94 1 CA>TA
NC_003310.1 41474 41475 65.257 C T False 226 107,119 1 CT>TT
NC_003310.1 42209 42210 62.705 A G False 260 126,134 1 AC>GC
NC_003310.1 42514 42515 63.796 T A False 245 120,125 1 TT>AT
NC_003310.1 42528 42529 59.025 A G False 245 120,125 1 AT>GT
NC_003310.1 42585 42586 65.257 G T False 245 120,125 1 GC>TC
NC_003310.1 42592 42593 62.705 C T False 247 120,127 1 CA>TA
NC_003310.1 42964 42965 63.796 T C False 246 122,124 1 TG>CG
NC_003310.1 43234 43235 53.986 G A False 176 90,86 1 GC>AC
NC_003310.1 43762 43763 50.817 T C False 195 97,98 1 TA>CA
NC_003310.1 43888 43889 63.796 G A False 192 95,97 1 GC>AC
NC_003310.1 43955 43957 52.470 G GT True 218 110,108 2 NA
NC_003310.1 43993 43994 63.796 T C False 214 110,104 1 TG>CG
NC_003310.1 44542 44543 61.833 A T False 185 96,89 1 AA>TA
NC_003310.1 44795 44796 61.833 G A False 213 120,93 1 GC>AC
NC_003310.1 45777 45778 62.705 C T False 309 159,150 1 CG>TG
NC_003310.1 46413 46414 62.705 T C False 301 146,155 1 TG>CG
NC_003310.1 46992 46993 65.257 A G False 282 139,143 1 AT>GT
NC_003310.1 46998 46999 62.705 T A False 282 139,143 1 TA>AA
NC_003310.1 47526 47527 65.257 G A False 320 151,169 1 GA>AA
NC_003310.1 47610 47611 61.833 G A False 316 148,168 1 GA>AA
NC_003310.1 47663 47664 59.943 A C False 316 148,168 1 AG>CG
NC_003310.1 48243 48244 62.705 G A False 319 140,179 1 GC>AC
NC_003310.1 48329 48330 63.796 T G False 322 143,179 1 TA>GA
NC_003310.1 48443 48444 62.705 C T False 302 133,169 1 CG>TG
NC_003310.1 48447 48448 67.476 A G False 301 132,169 1 AC>GC
NC_003310.1 48453 48454 63.796 C A False 300 132,168 1 CA>AA
NC_003310.1 48461 48462 58.630 T C False 266 117,149 1 TA>CA
NC_003310.1 48531 48535 183.427 T TACA True 266 118,148 4 NA
NC_003310.1 48606 48607 61.108 G T False 251 111,140 1 GT>TT
NC_003310.1 48612 48614 57.623 A AT True 251 111,140 2 NA
NC_003310.1 48632 48633 65.257 A G False 257 113,144 1 AC>GC
NC_003310.1 48664 48666 48.843 A AT True 258 113,145 2 NA
NC_003310.1 48781 48782 61.108 C T False 248 110,138 1 CG>TG
NC_003310.1 48916 48917 70.000 G A False 256 115,141 1 GT>AT
NC_003310.1 49161 49162 58.268 T G False 270 128,142 1 TT>GT
NC_003310.1 49202 49203 57.062 C T False 269 128,141 1 CT>TT
NC_003310.1 49593 49595 63.796 G GA True 307 151,156 2 NA
NC_003310.1 49719 49722 122.941 T TAC True 308 152,156 3 NA
NC_003310.1 49753 49754 56.119 T G False 308 152,156 1 TG>GG
NC_003310.1 49761 49762 150.636 TAGGAC T True 308 152,156 1 TA>TA
NC_003310.1 49798 49799 76.810 CTAT C True 313 160,153 1 CT>CT
NC_003310.1 49959 49960 6031.180 CAATGAGTAA...(254) C True 291 144,147 1 CA>CA
NC_003310.1 50245 50246 62.705 A G False 279 141,138 1 AC>GC
NC_003310.1 50320 50321 57.623 T C False 290 146,144 1 TA>CA
NC_003310.1 50341 50342 65.257 T G False 290 146,144 1 TG>GG
NC_003310.1 50417 50418 65.257 A G False 271 137,134 1 AG>GG
NC_003310.1 50427 50428 62.705 A C False 262 136,126 1 AA>CA
NC_003310.1 50440 50444 183.929 A ATAG True 262 136,126 4 NA
NC_003310.1 50668 50669 60.486 T C False 244 123,121 1 TA>CA
NC_003310.1 50803 50804 63.796 C A False 218 114,104 1 CG>AG
NC_003310.1 51227 51228 57.062 T C False 200 106,94 1 TC>CC
NC_003310.1 51415 51416 63.796 T C False 176 96,80 1 TG>CG
NC_003310.1 51499 51500 65.257 G T False 172 95,77 1 GG>TG
NC_003310.1 52135 52136 63.796 T G False 191 110,81 1 TG>GG
NC_003310.1 52233 52234 62.705 T C False 206 115,91 1 TA>CA
NC_003310.1 52270 52271 61.833 T C False 211 117,94 1 TG>CG
NC_003310.1 52570 52571 63.796 G A False 195 106,89 1 GT>AT
NC_003310.1 52774 52777 122.320 T TTC True 185 95,90 3 NA
NC_003310.1 52848 52851 122.164 G GTA True 170 89,81 3 NA
NC_003310.1 52867 52868 57.062 A C False 170 89,81 1 AG>CG
NC_003310.1 53440 53441 61.108 C T False 190 97,93 1 CG>TG
NC_003310.1 53474 53475 61.108 T C False 195 101,94 1 TA>CA
NC_003310.1 53687 53688 39.416 AT A True 170 89,81 1 AT>AT
NC_003310.1 54359 54360 63.796 C T False 186 97,89 1 CA>TA
NC_003310.1 54627 54628 62.705 G T False 153 78,75 1 GA>TA
NC_003310.1 54957 54958 59.943 C T False 128 67,61 1 CT>TT
NC_003310.1 55158 55159 62.705 G A False 143 78,65 1 GA>AA
NC_003310.1 55211 55212 65.257 C T False 143 78,65 1 CT>TT
NC_003310.1 55262 55263 60.486 A C False 151 82,69 1 AC>CC
NC_003310.1 55429 55430 59.460 G A False 147 82,65 1 GT>AT
NC_003310.1 55480 55481 61.108 C A False 157 84,73 1 CA>AA
NC_003310.1 55530 55531 65.257 A G False 157 84,73 1 AT>GT
NC_003310.1 55542 55543 62.705 T G False 157 84,73 1 TG>GG
NC_003310.1 56390 56391 61.833 G A False 181 93,88 1 GA>AA
NC_003310.1 56625 56626 65.257 T G False 183 95,88 1 TG>GG
NC_003310.1 56770 56771 56.807 A G False 160 78,82 1 AT>GT
NC_003310.1 56842 56843 55.171 A C False 167 80,87 1 AT>CT
NC_003310.1 56908 56909 65.257 G A False 179 85,94 1 GA>AA
NC_003310.1 57461 57462 59.943 C T False 183 90,93 1 CA>TA
NC_003310.1 57476 57477 63.796 G A False 183 90,93 1 GG>AG
NC_003310.1 58078 58079 63.796 C T False 157 81,76 1 CA>TA
NC_003310.1 58670 58671 62.705 T G False 157 81,76 1 TG>GG
NC_003310.1 58804 58805 62.705 C T False 150 79,71 1 CG>TG
NC_003310.1 59706 59707 63.796 C T False 274 143,131 1 CG>TG
NC_003310.1 59845 59846 53.986 T C False 267 138,129 1 TT>CT
NC_003310.1 59895 59896 63.796 A G False 269 138,131 1 AA>GA
NC_003310.1 59951 59952 59.025 T C False 275 141,134 1 TA>CA
NC_003310.1 60308 60309 65.257 G T False 329 162,167 1 GA>TA
NC_003310.1 60404 60405 63.796 C T False 329 162,167 1 CA>TA
NC_003310.1 60740 60741 63.796 C T False 297 142,155 1 CG>TG
NC_003310.1 61145 61146 61.833 G A False 293 142,151 1 GA>AA
NC_003310.1 61238 61239 63.796 C T False 326 160,166 1 CA>TA
NC_003310.1 61319 61320 67.476 G A False 326 160,166 1 GA>AA
NC_003310.1 61529 61530 61.833 C T False 322 161,161 1 CG>TG
NC_003310.1 61761 61762 62.705 T C False 342 172,170 1 TA>CA
NC_003310.1 61921 61922 63.796 C T False 328 161,167 1 CA>TA
NC_003310.1 61982 61983 67.476 G A False 328 161,167 1 GC>AC
NC_003310.1 62239 62240 61.833 C G False 333 164,169 1 CA>GA
NC_003310.1 62547 62548 60.486 T G False 309 150,159 1 TG>GG
NC_003310.1 62730 62731 58.268 G A False 317 153,164 1 GG>AG
NC_003310.1 63026 63027 61.833 A G False 287 135,152 1 AG>GG
NC_003310.1 63147 63148 65.257 G C False 277 129,148 1 GA>CA
NC_003310.1 63176 63177 63.796 A T False 295 135,160 1 AG>TG
NC_003310.1 63220 63221 61.833 T C False 297 136,161 1 TA>CA
NC_003310.1 63329 63330 61.108 C A False 273 129,144 1 CT>AT
NC_003310.1 63514 63515 62.705 C T False 230 109,121 1 CT>TT
NC_003310.1 64199 64200 55.526 C A False 187 89,98 1 CG>AG
NC_003310.1 64306 64307 18.745 TA T True 199 95,104 1 TA>TA
NC_003310.1 64443 64444 61.833 A T False 195 95,100 1 AG>TG
NC_003310.1 64524 64525 63.796 A G False 180 90,90 1 AC>GC
NC_003310.1 64923 64924 59.460 T C False 237 107,130 1 TG>CG
NC_003310.1 65097 65098 63.796 C T False 253 113,140 1 CA>TA
NC_003310.1 65215 65216 61.108 T G False 255 113,142 1 TT>GT
NC_003310.1 65430 65431 61.108 C T False 265 125,140 1 CA>TA
NC_003310.1 65577 65578 59.460 C T False 265 125,140 1 CT>TT
NC_003310.1 66250 66251 63.796 A G False 295 141,154 1 AT>GT
NC_003310.1 66571 66572 58.268 G A False 324 153,171 1 GA>AA
NC_003310.1 66739 66740 59.460 G A False 319 150,169 1 GT>AT
NC_003310.1 67415 67416 63.796 C T False 288 136,152 1 CA>TA
NC_003310.1 67626 67627 42.948 A T False 279 132,147 1 AC>TC
NC_003310.1 67937 67938 61.833 G A False 253 120,133 1 GC>AC
NC_003310.1 68144 68145 65.257 C T False 234 113,121 1 CG>TG
NC_003310.1 68537 68538 59.943 G A False 131 64,67 1 GT>AT
NC_003310.1 68854 68855 63.796 G A False 141 68,73 1 GA>AA
NC_003310.1 68924 68925 60.486 C T False 140 68,72 1 CG>TG
NC_003310.1 69035 69036 61.108 C A False 228 110,118 1 CT>AT
NC_003310.1 69519 69520 63.796 C T False 200 98,102 1 CT>TT
NC_003310.1 69622 69623 65.257 G A False 201 98,103 1 GG>AG
NC_003310.1 69627 69628 59.460 T C False 201 98,103 1 TG>CG
NC_003310.1 69824 69825 58.630 C T False 218 106,112 1 CA>TA
NC_003310.1 69885 69886 65.257 A G False 218 105,113 1 AT>GT
NC_003310.1 70101 70102 63.796 C T False 214 103,111 1 CA>TA
NC_003310.1 70571 70572 60.486 T A False 232 119,113 1 TC>AC
NC_003310.1 71069 71070 63.796 G A False 247 124,123 1 GT>AT
NC_003310.1 71949 71950 58.268 T G False 210 103,107 1 TG>GG
NC_003310.1 72170 72171 57.062 T C False 210 103,107 1 TT>CT
NC_003310.1 72777 72778 58.630 T A False 197 106,91 1 TA>AA
NC_003310.1 73048 73049 61.833 A C False 204 109,95 1 AG>CG
NC_003310.1 73309 73310 65.257 T C False 152 78,74 1 TG>CG
NC_003310.1 73447 73449 61.833 T TA True 156 79,77 2 NA
NC_003310.1 73478 73479 61.833 G A False 155 78,77 1 GT>AT
NC_003310.1 73695 73696 61.108 C T False 152 76,76 1 CT>TT
NC_003310.1 73826 73827 61.108 A G False 245 132,113 1 AT>GT
NC_003310.1 73860 73861 63.796 A G False 267 145,122 1 AT>GT
NC_003310.1 74384 74385 61.108 T C False 260 143,117 1 TT>CT
NC_003310.1 74490 74491 61.833 T A False 273 149,124 1 TT>AT
NC_003310.1 74504 74505 56.565 T C False 273 149,124 1 TA>CA
NC_003310.1 74534 74535 61.833 G A False 272 149,123 1 GC>AC
NC_003310.1 74635 74636 61.833 C T False 269 147,122 1 CA>TA
NC_003310.1 75339 75340 65.257 C T False 220 121,99 1 CG>TG
NC_003310.1 75349 75350 65.257 G A False 220 121,99 1 GT>AT
NC_003310.1 75512 75513 67.476 G A False 203 113,90 1 GA>AA
NC_003310.1 75623 75624 57.334 T C False 200 110,90 1 TT>CT
NC_003310.1 76050 76051 61.108 T A False 181 102,79 1 TA>AA
NC_003310.1 76094 76095 60.486 G A False 180 102,78 1 GC>AC
NC_003310.1 76385 76386 57.623 C T False 123 64,59 1 CG>TG
NC_003310.1 76478 76479 67.476 G A False 123 64,59 1 GA>AA
NC_003310.1 76576 76577 65.257 C G False 122 64,58 1 CA>GA
NC_003310.1 76655 76656 61.108 C T False 106 58,48 1 CA>TA
NC_003310.1 77624 77625 61.108 T A False 157 86,71 1 TG>AG
NC_003310.1 78063 78064 61.833 G A False 191 103,88 1 GT>AT
NC_003310.1 78294 78295 58.630 T C False 207 113,94 1 TA>CA
NC_003310.1 78351 78352 2.348 CT C True 206 113,93 1 CT>CT
NC_003310.1 78396 78397 62.705 C T False 206 113,93 1 CG>TG
NC_003310.1 78471 78472 65.257 G A False 206 112,94 1 GC>AC
NC_003310.1 78557 78558 54.118 T C False 205 111,94 1 TT>CT
NC_003310.1 78921 78922 67.476 G A False 219 120,99 1 GT>AT
NC_003310.1 79184 79185 65.257 G A False 231 126,105 1 GC>AC
NC_003310.1 79656 79657 63.796 G A False 228 131,97 1 GA>AA
NC_003310.1 80734 80735 59.460 C A False 160 89,71 1 CA>AA
NC_003310.1 80798 80799 65.257 C T False 159 89,70 1 CT>TT
NC_003310.1 80914 80915 65.257 G A False 159 89,70 1 GC>AC
NC_003310.1 81001 81002 65.257 C A False 172 97,75 1 CG>AG
NC_003310.1 81215 81216 60.486 G A False 199 110,89 1 GC>AC
NC_003310.1 81540 81541 58.630 T C False 185 99,86 1 TG>CG
NC_003310.1 81775 81776 61.833 A C False 210 110,100 1 AG>CG
NC_003310.1 82102 82103 61.108 G A False 231 122,109 1 GT>AT
NC_003310.1 83029 83030 63.796 A G False 259 127,132 1 AA>GA
NC_003310.1 83259 83260 65.257 C T False 259 127,132 1 CA>TA
NC_003310.1 83336 83337 65.257 G A False 243 116,127 1 GT>AT
NC_003310.1 83455 83456 58.630 T C False 243 116,127 1 TA>CA
NC_003310.1 83548 83549 61.833 G A False 231 109,122 1 GA>AA
NC_003310.1 83736 83737 62.705 G T False 222 104,118 1 GA>TA
NC_003310.1 84240 84242 62.705 G GA True 274 134,140 2 NA
NC_003310.1 84252 84253 33.643 CA C True 274 134,140 1 CA>CA
NC_003310.1 84262 84263 65.257 T C False 274 134,140 1 TG>CG
NC_003310.1 84586 84587 65.257 C T False 288 137,151 1 CA>TA
NC_003310.1 84646 84647 65.257 C T False 281 133,148 1 CG>TG
NC_003310.1 84690 84691 59.943 T C False 281 133,148 1 TC>CC
NC_003310.1 84724 84725 62.705 G A False 307 145,162 1 GA>AA
NC_003310.1 84821 84822 62.705 C T False 309 147,162 1 CG>TG
NC_003310.1 84914 84915 65.257 G T False 294 137,157 1 GA>TA
NC_003310.1 84961 84962 61.833 C T False 294 137,157 1 CG>TG
NC_003310.1 85111 85112 63.796 T A False 289 145,144 1 TT>AT
NC_003310.1 85599 85600 57.934 C T False 273 133,140 1 CG>TG
NC_003310.1 85633 85634 65.257 C T False 273 133,140 1 CG>TG
NC_003310.1 86116 86117 67.476 C T False 286 150,136 1 CA>TA
NC_003310.1 86229 86230 50.020 T C False 302 159,143 1 TC>CC
NC_003310.1 86563 86564 59.943 C T False 299 158,141 1 CA>TA
NC_003310.1 86606 86607 61.108 G A False 309 162,147 1 GT>AT
NC_003310.1 86668 86669 60.486 G A False 309 162,147 1 GG>AG
NC_003310.1 86860 86861 61.833 C T False 342 176,166 1 CG>TG
NC_003310.1 87200 87201 59.460 T C False 323 170,153 1 TT>CT
NC_003310.1 87436 87437 62.705 C T False 300 160,140 1 CG>TG
NC_003310.1 88036 88037 65.257 T C False 241 120,121 1 TG>CG
NC_003310.1 88498 88499 65.257 G A False 225 109,116 1 GT>AT
NC_003310.1 88520 88521 63.796 G A False 225 109,116 1 GA>AA
NC_003310.1 88775 88776 63.796 T G False 160 78,82 1 TG>GG
NC_003310.1 88808 88809 61.833 G A False 163 79,84 1 GA>AA
NC_003310.1 89001 89002 59.025 A G False 159 79,80 1 AT>GT
NC_003310.1 89322 89323 63.796 G A False 138 66,72 1 GC>AC
NC_003310.1 89503 89504 60.486 G A False 174 82,92 1 GA>AA
NC_003310.1 89540 89541 62.705 T C False 175 82,93 1 TA>CA
NC_003310.1 89570 89571 65.257 G A False 175 82,93 1 GA>AA
NC_003310.1 89774 89775 60.486 C T False 122 54,68 1 CG>TG
NC_003310.1 89833 89834 61.833 T C False 121 54,67 1 TA>CA
NC_003310.1 89857 89858 58.630 T C False 121 54,67 1 TA>CA
NC_003310.1 90008 90009 61.108 G A False 175 85,90 1 GA>AA
NC_003310.1 90591 90592 65.257 A G False 303 140,163 1 AC>GC
NC_003310.1 90629 90630 61.108 A T False 302 139,163 1 AC>TC
NC_003310.1 91019 91020 65.257 A G False 374 175,199 1 AT>GT
NC_003310.1 91046 91047 65.257 G A False 374 175,199 1 GA>AA
NC_003310.1 91372 91373 11.595 TA T True 404 194,210 1 TA>TA
NC_003310.1 91487 91488 57.623 C T False 399 191,208 1 CG>TG
NC_003310.1 91549 91550 62.705 G A False 424 201,223 1 GC>AC
NC_003310.1 91852 91853 62.705 G T False 468 220,248 1 GA>TA
NC_003310.1 92132 92133 171.915 GGAAGAAGTA G True 463 218,245 1 GG>GG
NC_003310.1 92775 92776 65.257 G A False 381 184,197 1 GT>AT
NC_003310.1 93102 93103 62.705 T C False 414 199,215 1 TT>CT
NC_003310.1 93173 93174 61.833 C T False 397 193,204 1 CG>TG
NC_003310.1 93305 93306 65.257 G A False 392 191,201 1 GT>AT
NC_003310.1 93629 93630 62.705 G A False 317 161,156 1 GC>AC
NC_003310.1 93771 93772 63.796 G T False 263 137,126 1 GA>TA
NC_003310.1 94010 94011 61.108 G A False 233 126,107 1 GA>AA
NC_003310.1 94291 94292 63.796 A G False 178 101,77 1 AC>GC
NC_003310.1 94384 94385 62.705 G A False 213 121,92 1 GA>AA
NC_003310.1 94519 94520 50.233 T C False 212 120,92 1 TG>CG
NC_003310.1 94798 94799 65.257 T C False 228 127,101 1 TG>CG
NC_003310.1 95621 95622 62.705 A G False 218 121,97 1 AT>GT
NC_003310.1 95638 95639 62.705 C T False 218 121,97 1 CG>TG
NC_003310.1 96343 96344 65.257 T C False 229 122,107 1 TG>CG
NC_003310.1 96905 96906 65.257 A G False 233 123,110 1 AT>GT
NC_003310.1 97316 97317 61.833 G A False 157 69,88 1 GC>AC
NC_003310.1 97562 97563 65.257 A G False 155 65,90 1 AT>GT
NC_003310.1 97751 97752 63.796 C T False 188 83,105 1 CT>TT
NC_003310.1 97759 97760 58.630 A C False 188 83,105 1 AG>CG
NC_003310.1 98077 98078 65.257 G A False 192 80,112 1 GC>AC
NC_003310.1 98933 98934 63.796 T C False 282 127,155 1 TG>CG
NC_003310.1 99416 99417 57.062 A C False 261 123,138 1 AT>CT
NC_003310.1 99690 99691 61.108 A G False 227 114,113 1 AA>GA
NC_003310.1 99854 99855 59.943 A G False 233 116,117 1 AA>GA
NC_003310.1 100484 100485 63.796 A G False 221 107,114 1 AG>GG
NC_003310.1 100712 100713 61.108 G T False 246 122,124 1 GA>TA
NC_003310.1 101494 101495 63.796 G A False 224 112,112 1 GA>AA
NC_003310.1 101516 101517 60.486 A G False 223 111,112 1 AC>GC
NC_003310.1 101965 101966 61.833 G A False 192 98,94 1 GT>AT
NC_003310.1 102112 102113 62.705 C T False 204 106,98 1 CC>TC
NC_003310.1 102623 102624 62.705 C T False 184 93,91 1 CG>TG
NC_003310.1 102727 102728 63.796 A G False 174 88,86 1 AT>GT
NC_003310.1 102844 102845 63.796 C T False 186 95,91 1 CG>TG
NC_003310.1 103818 103819 50.125 C T False 223 115,108 1 CC>TC
NC_003310.1 103976 103977 55.171 T C False 234 117,117 1 TG>CG
NC_003310.1 105253 105254 65.257 A C False 247 129,118 1 AG>CG
NC_003310.1 105288 105289 61.833 A C False 247 129,118 1 AT>CT
NC_003310.1 105333 105334 61.108 G A False 247 129,118 1 GA>AA
NC_003310.1 105706 105707 62.705 G T False 279 151,128 1 GA>TA
NC_003310.1 106046 106047 59.025 T C False 285 155,130 1 TA>CA
NC_003310.1 106087 106088 60.486 A C False 293 160,133 1 AG>CG
NC_003310.1 106416 106417 63.796 T C False 302 166,136 1 TG>CG
NC_003310.1 106838 106839 63.796 G A False 334 175,159 1 GT>AT
NC_003310.1 107122 107123 65.257 T C False 331 171,160 1 TG>CG
NC_003310.1 107408 107409 54.844 T C False 275 133,142 1 TC>CC
NC_003310.1 108397 108398 61.833 C T False 195 91,104 1 CA>TA
NC_003310.1 108836 108837 61.833 A G False 200 95,105 1 AG>GG
NC_003310.1 109139 109140 62.705 C A False 189 87,102 1 CG>AG
NC_003310.1 109400 109401 59.025 C G False 120 64,56 1 CG>GG
NC_003310.1 109514 109515 63.796 A G False 114 64,50 1 AC>GC
NC_003310.1 109604 109605 54.118 A C False 110 58,52 1 AT>CT
NC_003310.1 109676 109677 57.062 T C False 141 76,65 1 TA>CA
NC_003310.1 109793 109794 60.486 G T False 146 78,68 1 GG>TG
NC_003310.1 109952 109953 22.814 GA G True 139 74,65 1 GA>GA
NC_003310.1 110047 110048 65.257 A G False 138 74,64 1 AT>GT
NC_003310.1 110585 110586 62.705 C T False 121 67,54 1 CT>TT
NC_003310.1 111076 111077 62.705 G A False 119 67,52 1 GT>AT
NC_003310.1 111665 111666 61.833 G A False 107 66,41 1 GG>AG
NC_003310.1 111818 111819 62.705 A C False 116 67,49 1 AG>CG
NC_003310.1 111863 111864 63.796 A G False 116 66,50 1 AC>GC
NC_003310.1 112157 112158 63.796 A G False 133 74,59 1 AT>GT
NC_003310.1 113111 113112 61.833 G T False 155 84,71 1 GG>TG
NC_003310.1 113378 113379 61.833 T G False 140 76,64 1 TA>GA
NC_003310.1 113586 113587 59.460 G A False 128 67,61 1 GG>AG
NC_003310.1 113822 113823 65.257 C T False 128 66,62 1 CA>TA
NC_003310.1 113828 113829 59.025 G A False 128 66,62 1 GC>AC
NC_003310.1 113874 113875 57.934 T A False 128 66,62 1 TC>AC
NC_003310.1 113998 114000 125.410 AC GT True 126 65,61 2 NA
NC_003310.1 114489 114490 61.833 A G False 149 79,70 1 AC>GC
NC_003310.1 114504 114505 57.062 G A False 149 79,70 1 GT>AT
NC_003310.1 114738 114739 59.460 T C False 137 73,64 1 TA>CA
NC_003310.1 116030 116031 61.108 A G False 157 86,71 1 AA>GA
NC_003310.1 116199 116200 10.331 G A False 156 86,70 1 GA>AA
NC_003310.1 116207 116208 62.705 A G False 156 86,70 1 AA>GA
NC_003310.1 116741 116742 65.257 G A False 185 94,91 1 GC>AC
NC_003310.1 117053 117054 59.943 C T False 230 115,115 1 CA>TA
NC_003310.1 117959 117960 57.934 T C False 201 100,101 1 TG>CG
NC_003310.1 118077 118078 61.108 G A False 219 109,110 1 GC>AC
NC_003310.1 118710 118711 61.108 C A False 199 101,98 1 CA>AA
NC_003310.1 118866 118867 63.796 C T False 253 129,124 1 CG>TG
NC_003310.1 118926 118927 65.257 T A False 264 134,130 1 TC>AC
NC_003310.1 118943 118944 67.476 A G False 265 134,131 1 AT>GT
NC_003310.1 119018 119019 65.257 C T False 263 131,132 1 CA>TA
NC_003310.1 119297 119298 63.796 A G False 232 118,114 1 AC>GC
NC_003310.1 119330 119331 62.705 T C False 269 140,129 1 TT>CT
NC_003310.1 120008 120009 62.705 G T False 324 167,157 1 GG>TG
NC_003310.1 120803 120804 65.257 C T False 295 152,143 1 CA>TA
NC_003310.1 120923 120924 63.796 A G False 284 145,139 1 AA>GA
NC_003310.1 121023 121024 65.257 T A False 284 145,139 1 TA>AA
NC_003310.1 121072 121073 61.108 T C False 270 139,131 1 TG>CG
NC_003310.1 121186 121187 63.796 T C False 213 105,108 1 TG>CG
NC_003310.1 121579 121580 61.833 C T False 201 97,104 1 CT>TT
NC_003310.1 121757 121758 63.796 A G False 199 96,103 1 AT>GT
NC_003310.1 122457 122458 62.705 A C False 102 49,53 1 AG>CG
NC_003310.1 122535 122536 61.108 T C False 102 49,53 1 TT>CT
NC_003310.1 122646 122647 62.705 C T False 111 54,57 1 CG>TG
NC_003310.1 123248 123249 65.257 G A False 220 115,105 1 GC>AC
NC_003310.1 123365 123366 67.476 G A False 221 115,106 1 GA>AA
NC_003310.1 123603 123604 63.796 C T False 241 129,112 1 CG>TG
NC_003310.1 123736 123737 65.257 A C False 249 134,115 1 AG>CG
NC_003310.1 123994 123995 61.108 G A False 260 138,122 1 GG>AG
NC_003310.1 124332 124333 62.705 C T False 246 129,117 1 CA>TA
NC_003310.1 124634 124635 63.796 A G False 225 118,107 1 AC>GC
NC_003310.1 124688 124689 61.833 A G False 225 118,107 1 AC>GC
NC_003310.1 124705 124706 62.705 A G False 225 118,107 1 AA>GA
NC_003310.1 124734 124735 63.796 C T False 225 118,107 1 CT>TT
NC_003310.1 125218 125219 61.833 C T False 214 109,105 1 CC>TC
NC_003310.1 125269 125270 63.796 C T False 228 116,112 1 CT>TT
NC_003310.1 125665 125666 63.796 A G False 267 133,134 1 AT>GT
NC_003310.1 126413 126414 67.476 G A False 226 100,126 1 GA>AA
NC_003310.1 126957 126958 59.943 G A False 185 83,102 1 GA>AA
NC_003310.1 126970 126971 59.025 C T False 186 83,103 1 CA>TA
NC_003310.1 126974 126975 63.796 G A False 186 83,103 1 GT>AT
NC_003310.1 126997 126998 57.062 A C False 186 83,103 1 AG>CG
NC_003310.1 127020 127021 61.833 C T False 186 83,103 1 CA>TA
NC_003310.1 127263 127264 43.343 C T False 214 101,113 1 CT>TT
NC_003310.1 127271 127272 65.257 C G False 214 101,113 1 CC>GC
NC_003310.1 127330 127331 65.257 A G False 214 101,113 1 AA>GA
NC_003310.1 127532 127533 25.326 G A False 182 86,96 1 GA>AA
NC_003310.1 127617 127618 65.257 G A False 182 86,96 1 GG>AG
NC_003310.1 127648 127649 67.476 G A False 183 87,96 1 GC>AC
NC_003310.1 127839 127840 70.000 G A False 194 93,101 1 GC>AC
NC_003310.1 127849 127850 62.705 C T False 194 93,101 1 CC>TC
NC_003310.1 128117 128118 65.257 C T False 224 107,117 1 CA>TA
NC_003310.1 128475 128476 62.705 C T False 224 109,115 1 CA>TA
NC_003310.1 128514 128515 55.171 C T False 285 137,148 1 CT>TT
NC_003310.1 128538 128539 59.943 G A False 283 136,147 1 GA>AA
NC_003310.1 128886 128887 65.257 A G False 301 144,157 1 AC>GC
NC_003310.1 129206 129207 63.796 G T False 219 105,114 1 GT>TT
NC_003310.1 129246 129247 61.833 C T False 261 126,135 1 CG>TG
NC_003310.1 129252 129253 61.833 C T False 261 126,135 1 CG>TG
NC_003310.1 129420 129421 62.705 C T False 267 129,138 1 CG>TG
NC_003310.1 130142 130143 62.705 C T False 299 144,155 1 CG>TG
NC_003310.1 130359 130360 67.476 G A False 383 177,206 1 GA>AA
NC_003310.1 130829 130830 67.476 G T False 357 161,196 1 GT>TT
NC_003310.1 130981 130982 62.705 C T False 357 161,196 1 CG>TG
NC_003310.1 131223 131224 61.833 T A False 345 158,187 1 TT>AT
NC_003310.1 131866 131867 62.705 T G False 359 168,191 1 TA>GA
NC_003310.1 132050 132051 62.705 G A False 313 148,165 1 GA>AA
NC_003310.1 132313 132314 65.257 G A False 311 148,163 1 GG>AG
NC_003310.1 133008 133009 60.486 C T False 320 146,174 1 CG>TG
NC_003310.1 133105 133106 60.486 C A False 300 138,162 1 CC>AC
NC_003310.1 134089 134090 60.486 C T False 259 128,131 1 CA>TA
NC_003310.1 134092 134093 67.476 T C False 259 128,131 1 TG>CG
NC_003310.1 134401 134402 59.943 C T False 274 137,137 1 CG>TG
NC_003310.1 134569 134570 63.796 A G False 242 118,124 1 AC>GC
NC_003310.1 134720 134721 187.304 CATCAAGATT C True 235 115,120 1 CA>CA
NC_003310.1 135011 135012 62.705 C A False 261 124,137 1 CT>AT
NC_003310.1 135102 135104 61.833 G GT True 250 122,128 2 NA
NC_003310.1 135178 135179 65.257 A G False 251 122,129 1 AC>GC
NC_003310.1 135368 135384 635.295 C CTTTTTTTTT...(16) True 242 116,126 16 NA
NC_003310.1 135375 135376 61.108 C T False 242 116,126 1 CT>TT
NC_003310.1 135421 135422 65.257 C T False 264 128,136 1 CG>TG
NC_003310.1 135467 135468 59.943 G A False 263 127,136 1 GC>AC
NC_003310.1 135490 135491 65.257 C T False 263 127,136 1 CG>TG
NC_003310.1 135546 135547 65.257 C T False 263 127,136 1 CT>TT
NC_003310.1 135594 135595 65.257 G A False 258 123,135 1 GC>AC
NC_003310.1 135634 135635 62.705 A G False 258 123,135 1 AC>GC
NC_003310.1 135721 135722 49.817 G A False 256 122,134 1 GC>AC
NC_003310.1 135757 136207 2398.850 T TATCGGTCCA...(450) True 239 112,127 450 NA
NC_003310.1 135779 135780 45.062 C T False 174 83,91 1 CC>TC
NC_003310.1 135965 135966 61.833 T C False 177 85,92 1 TG>CG
NC_003310.1 136046 136047 61.833 T A False 177 84,93 1 TC>AC
NC_003310.1 136139 136140 65.257 G A False 177 84,93 1 GC>AC
NC_003310.1 136167 136168 61.108 T G False 177 84,93 1 TC>GC
NC_003310.1 136304 136305 60.486 G A False 179 84,95 1 GA>AA
NC_003310.1 136578 136579 61.833 C T False 179 84,95 1 CT>TT
NC_003310.1 136697 136698 62.705 G A False 184 87,97 1 GA>AA
NC_003310.1 136725 136726 61.108 A G False 195 91,104 1 AC>GC
NC_003310.1 137519 137520 62.705 G A False 160 68,92 1 GT>AT
NC_003310.1 137800 137801 59.460 T A False 158 67,91 1 TG>AG
NC_003310.1 137828 137829 62.705 A G False 176 78,98 1 AT>GT
NC_003310.1 138003 138004 65.257 G T False 177 79,98 1 GG>TG
NC_003310.1 138203 138204 60.486 A C False 182 82,100 1 AG>CG
NC_003310.1 138299 138300 55.345 C A False 182 82,100 1 CG>AG
NC_003310.1 138311 138312 44.711 G A False 182 82,100 1 GG>AG
NC_003310.1 138325 138326 533.020 AATCATCATC...(28) A True 182 82,100 1 AA>AA
NC_003310.1 138400 138401 117.414 TATCATC T True 215 101,114 1 TA>TA
NC_003310.1 138442 138443 58.630 G A False 215 101,114 1 GA>AA
NC_003310.1 138450 138451 61.833 G A False 215 101,114 1 GT>AT
NC_003310.1 138483 138484 63.796 C T False 215 101,114 1 CT>TT
NC_003310.1 138533 138534 59.460 G A False 229 106,123 1 GT>AT
NC_003310.1 138710 138711 62.705 C A False 244 110,134 1 CG>AG
NC_003310.1 138716 138717 59.943 G A False 244 110,134 1 GA>AA
NC_003310.1 138872 138873 63.796 G T False 263 124,139 1 GA>TA
NC_003310.1 139223 139224 61.833 C T False 264 124,140 1 CG>TG
NC_003310.1 139473 139474 61.833 G A False 263 123,140 1 GT>AT
NC_003310.1 139577 139578 61.108 C T False 263 123,140 1 CG>TG
NC_003310.1 139676 139677 63.796 T C False 255 122,133 1 TG>CG
NC_003310.1 139771 139772 62.705 G A False 258 124,134 1 GT>AT
NC_003310.1 140359 140360 55.913 C T False 212 109,103 1 CA>TA
NC_003310.1 140473 140474 65.257 C T False 199 102,97 1 CA>TA
NC_003310.1 140500 140501 63.796 A G False 202 103,99 1 AA>GA
NC_003310.1 140592 140593 63.796 C T False 204 103,101 1 CA>TA
NC_003310.1 140686 140687 61.833 T G False 204 103,101 1 TA>GA
NC_003310.1 140794 140795 62.705 C T False 212 105,107 1 CA>TA
NC_003310.1 141131 141132 63.796 G T False 193 92,101 1 GA>TA
NC_003310.1 141269 141273 180.372 A ATGT True 185 89,96 4 NA
NC_003310.1 141382 141383 65.257 C T False 190 93,97 1 CA>TA
NC_003310.1 141598 141599 65.257 C T False 163 81,82 1 CG>TG
NC_003310.1 141614 141615 62.705 G A False 163 81,82 1 GC>AC
NC_003310.1 141717 141718 63.796 C T False 163 81,82 1 CA>TA
NC_003310.1 141947 141957 380.404 A AATAACAATT True 181 90,91 10 NA
NC_003310.1 142727 142728 59.460 C T False 163 80,83 1 CT>TT
NC_003310.1 142905 142906 63.796 A G False 194 93,101 1 AC>GC
NC_003310.1 143111 143112 63.796 A T False 176 86,90 1 AA>TA
NC_003310.1 143134 143135 62.705 G A False 178 87,91 1 GA>AA
NC_003310.1 143198 143199 63.796 C T False 173 86,87 1 CG>TG
NC_003310.1 143331 143332 61.108 G A False 186 91,95 1 GC>AC
NC_003310.1 143593 143594 63.796 A G False 223 103,120 1 AC>GC
NC_003310.1 143735 143736 63.796 G A False 228 105,123 1 GG>AG
NC_003310.1 143890 143891 63.796 A G False 224 100,124 1 AA>GA
NC_003310.1 143902 143903 61.833 A G False 224 100,124 1 AG>GG
NC_003310.1 143993 143994 52.204 T C False 225 102,123 1 TA>CA
NC_003310.1 144172 144173 60.486 C T False 247 111,136 1 CA>TA
NC_003310.1 144284 144285 59.943 C A False 230 104,126 1 CG>AG
NC_003310.1 144585 144587 61.833 T TA True 302 138,164 2 NA
NC_003310.1 144857 144858 65.257 T A False 323 145,178 1 TA>AA
NC_003310.1 144941 144942 63.796 G A False 329 149,180 1 GT>AT
NC_003310.1 144959 144960 61.833 A G False 329 149,180 1 AA>GA
NC_003310.1 145020 145021 65.257 T A False 329 149,180 1 TG>AG
NC_003310.1 145225 145226 49.719 C T False 327 150,177 1 CG>TG
NC_003310.1 145244 145245 418.275 CAATAACAAT...(16) C True 327 150,177 1 CA>CA
NC_003310.1 145274 145275 62.705 C T False 327 150,177 1 CA>TA
NC_003310.1 145305 145307 61.833 T TG True 328 150,178 2 NA
NC_003310.1 145550 145551 63.796 G A False 353 160,193 1 GC>AC
NC_003310.1 145590 145591 63.796 G T False 353 160,193 1 GA>TA
NC_003310.1 145653 145654 51.953 T C False 347 158,189 1 TA>CA
NC_003310.1 145678 145679 61.108 A G False 347 158,189 1 AA>GA
NC_003310.1 145742 145743 59.460 C T False 340 156,184 1 CA>TA
NC_003310.1 145844 145845 61.833 T C False 336 152,184 1 TG>CG
NC_003310.1 145872 145873 57.934 T C False 336 152,184 1 TG>CG
NC_003310.1 145896 145897 65.257 C T False 336 152,184 1 CG>TG
NC_003310.1 146589 146590 65.257 A G False 320 149,171 1 AT>GT
NC_003310.1 146921 146922 63.796 C T False 269 129,140 1 CT>TT
NC_003310.1 146935 146936 62.705 G T False 269 129,140 1 GA>TA
NC_003310.1 147150 147151 58.630 T C False 258 130,128 1 TG>CG
NC_003310.1 147183 147184 63.796 C T False 257 129,128 1 CT>TT
NC_003310.1 147370 147371 63.796 G T False 233 118,115 1 GA>TA
NC_003310.1 147398 147399 62.705 C A False 232 117,115 1 CT>AT
NC_003310.1 147489 147490 63.796 T G False 266 140,126 1 TG>GG
NC_003310.1 147650 147651 48.500 C A False 227 124,103 1 CA>AA
NC_003310.1 147738 147740 56.337 G GA True 247 132,115 2 NA
NC_003310.1 147754 147755 59.025 A G False 248 132,116 1 AA>GA
NC_003310.1 147805 147806 52.852 A G False 248 132,116 1 AC>GC
NC_003310.1 147821 147825 146.656 C CTAA True 248 132,116 4 NA
NC_003310.1 147882 147883 694.930 TATAACAATT...(26) T True 246 131,115 1 TA>TA
NC_003310.1 147935 147936 20.151 GA G True 257 139,118 1 GA>GA
NC_003310.1 147952 147955 121.050 C CCG True 257 139,118 3 NA
NC_003310.1 147959 147960 33.630 TC T True 265 144,121 1 TC>TC
NC_003310.1 147966 147967 65.257 T G False 264 143,121 1 TT>GT
NC_003310.1 148083 148084 63.796 G A False 263 146,117 1 GC>AC
NC_003310.1 148263 148264 65.257 A C False 241 137,104 1 AA>CA
NC_003310.1 148301 148303 123.667 AG GA True 245 140,105 2 NA
NC_003310.1 148314 148315 63.796 T C False 245 140,105 1 TA>CA
NC_003310.1 148362 148363 63.796 A G False 245 140,105 1 AG>GG
NC_003310.1 148500 148501 57.334 T G False 274 153,121 1 TG>GG
NC_003310.1 148555 148556 61.833 T C False 274 153,121 1 TC>CC
NC_003310.1 148727 148737 406.198 T TTATATTTTA True 253 139,114 10 NA
NC_003310.1 148734 148740 231.133 A ATATTT True 253 139,114 6 NA
NC_003310.1 148785 148786 50.880 TA T True 252 138,114 1 TA>TA
NC_003310.1 148818 148820 61.833 T TA True 257 142,115 2 NA
NC_003310.1 149280 149281 106.415 AATG A True 276 149,127 1 AA>AA
NC_003310.1 149346 149347 62.705 T C False 274 147,127 1 TT>CT
NC_003310.1 149637 149638 65.257 A G False 272 147,125 1 AT>GT
NC_003310.1 149657 149658 60.486 T C False 269 145,124 1 TA>CA
NC_003310.1 149717 149718 60.486 C T False 283 149,134 1 CG>TG
NC_003310.1 149761 149762 60.486 G T False 284 149,135 1 GA>TA
NC_003310.1 149983 149984 61.833 A G False 292 153,139 1 AC>GC
NC_003310.1 150136 150137 35.484 AG A True 292 153,139 1 AG>AG
NC_003310.1 150193 150195 6.615 T TA True 274 144,130 2 NA
NC_003310.1 150201 150202 22.293 A T False 274 144,130 1 AA>TA
NC_003310.1 150269 150270 60.486 G A False 274 144,130 1 GA>AA
NC_003310.1 151622 151623 65.257 T G False 298 147,151 1 TT>GT
NC_003310.1 151735 151736 63.796 A G False 293 145,148 1 AA>GA
NC_003310.1 151989 151990 62.705 T C False 256 123,133 1 TA>CA
NC_003310.1 152010 152011 63.796 A G False 257 124,133 1 AC>GC
NC_003310.1 152013 152014 62.705 G A False 257 124,133 1 GG>AG
NC_003310.1 152301 152302 62.705 C T False 278 136,142 1 CG>TG
NC_003310.1 152326 152327 61.108 C T False 273 132,141 1 CA>TA
NC_003310.1 152345 152346 58.268 C T False 273 132,141 1 CG>TG
NC_003310.1 152370 152371 55.171 C T False 273 132,141 1 CA>TA
NC_003310.1 152388 152390 24.580 A AT True 273 132,141 2 NA
NC_003310.1 152401 152402 32.840 G A False 273 132,141 1 GT>AT
NC_003310.1 152405 152406 33.786 T A False 273 132,141 1 TG>AG
NC_003310.1 152423 152424 2295.780 TATATGATGG...(120) T True 273 132,141 1 TA>TA
NC_003310.1 152588 152589 147.934 AATATGAT A True 263 128,135 1 AA>AA
NC_003310.1 152721 152722 61.108 T C False 262 128,134 1 TA>CA
NC_003310.1 152745 152746 63.796 G A False 253 124,129 1 GC>AC
NC_003310.1 152901 152902 65.257 C T False 261 130,131 1 CT>TT
NC_003310.1 152933 152934 67.476 T A False 265 130,135 1 TC>AC
NC_003310.1 152979 152985 293.991 G GATGAC True 265 130,135 6 NA
NC_003310.1 153001 153003 65.257 C CA True 265 130,135 2 NA
NC_003310.1 153248 153249 65.257 G T False 248 124,124 1 GG>TG
NC_003310.1 153279 153280 61.833 G A False 248 124,124 1 GC>AC
NC_003310.1 153300 153301 58.630 A C False 247 123,124 1 AT>CT
NC_003310.1 153420 153421 61.108 A C False 228 117,111 1 AG>CG
NC_003310.1 153882 153883 67.476 G A False 272 142,130 1 GT>AT
NC_003310.1 154223 154227 183.677 G GTTA True 257 132,125 4 NA
NC_003310.1 154284 154285 61.833 A G False 257 132,125 1 AT>GT
NC_003310.1 154923 154924 59.943 A T False 233 132,101 1 AT>TT
NC_003310.1 155601 155602 61.833 G A False 342 193,149 1 GT>AT
NC_003310.1 156219 156220 65.257 A G False 347 184,163 1 AA>GA
NC_003310.1 156306 156309 115.502 A ATC True 351 186,165 3 NA
NC_003310.1 156343 156344 59.943 T C False 350 185,165 1 TA>CA
NC_003310.1 156359 156360 59.460 G A False 350 185,165 1 GG>AG
NC_003310.1 156618 156619 63.796 A T False 339 177,162 1 AT>TT
NC_003310.1 156656 156657 61.833 T C False 339 177,162 1 TG>CG
NC_003310.1 156684 156685 63.796 A G False 339 177,162 1 AC>GC
NC_003310.1 156745 156746 59.025 A C False 342 180,162 1 AT>CT
NC_003310.1 156929 156930 59.460 T C False 344 181,163 1 TC>CC
NC_003310.1 157370 157372 10.912 A AT True 276 145,131 2 NA
NC_003310.1 157432 157433 47.320 A C False 276 145,131 1 AT>CT
NC_003310.1 157436 157437 53.614 A C False 276 145,131 1 AC>CC
NC_003310.1 157452 157453 182.294 AGATGATAT A True 276 145,131 1 AG>AG
NC_003310.1 157756 157757 59.460 G A False 243 125,118 1 GG>AG
NC_003310.1 157766 157767 41.274 AT A True 243 125,118 1 AT>AT
NC_003310.1 157805 157806 65.257 G A False 243 125,118 1 GT>AT
NC_003310.1 157850 157851 61.108 A G False 251 128,123 1 AT>GT
NC_003310.1 157964 157965 95.388 TAC T True 247 125,122 1 TA>TA
NC_003310.1 158169 158171 61.833 C CA True 249 126,123 2 NA
NC_003310.1 158367 158368 60.486 G T False 177 86,91 1 GA>TA
NC_003310.1 158450 158451 63.796 G T False 182 89,93 1 GT>TT
NC_003310.1 158486 158487 62.705 G T False 189 90,99 1 GT>TT
NC_003310.1 158507 158508 26.307 GA G True 189 90,99 1 GA>GA
NC_003310.1 158663 158664 62.705 T C False 205 100,105 1 TT>CT
NC_003310.1 159051 159052 65.257 G A False 201 101,100 1 GG>AG
NC_003310.1 159115 159116 65.257 G A False 201 101,100 1 GC>AC
NC_003310.1 159147 159148 61.833 A C False 214 107,107 1 AG>CG
NC_003310.1 159230 159231 58.268 C T False 221 110,111 1 CT>TT
NC_003310.1 159441 159442 61.108 T C False 187 93,94 1 TG>CG
NC_003310.1 159480 159481 65.257 G A False 187 93,94 1 GG>AG
NC_003310.1 159718 159719 100.762 AACG A True 188 94,94 1 AA>AA
NC_003310.1 159741 159742 42.768 CA C True 196 97,99 1 CA>CA
NC_003310.1 159746 159748 65.257 C CG True 196 97,99 2 NA
NC_003310.1 159760 159761 61.108 A C False 196 97,99 1 AA>CA
NC_003310.1 159855 159856 62.705 C T False 199 97,102 1 CT>TT
NC_003310.1 159973 159974 62.705 G A False 191 92,99 1 GC>AC
NC_003310.1 160570 160571 67.476 G A False 182 94,88 1 GT>AT
NC_003310.1 160627 160628 59.943 T A False 187 98,89 1 TA>AA
NC_003310.1 161059 161060 63.796 T C False 283 149,134 1 TG>CG
NC_003310.1 161222 161223 61.833 T A False 268 141,127 1 TA>AA
NC_003310.1 161277 161278 63.796 C T False 268 141,127 1 CG>TG
NC_003310.1 161282 161283 63.796 G A False 268 141,127 1 GC>AC
NC_003310.1 161294 161295 62.705 C T False 268 141,127 1 CG>TG
NC_003310.1 161353 161354 65.257 A G False 268 141,127 1 AG>GG
NC_003310.1 161502 161503 63.796 G A False 282 152,130 1 GT>AT
NC_003310.1 161946 161947 65.257 G A False 355 187,168 1 GA>AA
NC_003310.1 161994 161995 65.257 G A False 356 188,168 1 GG>AG
NC_003310.1 162034 162035 60.486 C T False 343 180,163 1 CT>TT
NC_003310.1 162087 162088 61.833 C T False 343 180,163 1 CT>TT
NC_003310.1 162091 162092 63.796 A G False 344 181,163 1 AT>GT
NC_003310.1 162150 162151 60.486 T C False 340 177,163 1 TA>CA
NC_003310.1 162342 162343 62.705 T C False 337 175,162 1 TG>CG
NC_003310.1 162423 162424 62.705 G A False 320 167,153 1 GC>AC
NC_003310.1 162531 162532 62.705 C T False 314 165,149 1 CG>TG
NC_003310.1 162555 162556 61.108 A T False 314 165,149 1 AG>TG
NC_003310.1 162908 162909 64.052 CTCTTA C True 302 160,142 1 CT>CT
NC_003310.1 162915 162916 11.778 AT A True 302 160,142 1 AT>AT
NC_003310.1 162920 162921 161.762 ATTAATAAT A True 301 159,142 1 AT>AT
NC_003310.1 162930 162931 14.957 CA C True 301 159,142 1 CA>CA
NC_003310.1 162933 162934 33.702 CTA C True 301 159,142 1 CT>CT
NC_003310.1 162937 162938 16.617 TA T True 301 159,142 1 TA>TA
NC_003310.1 162940 162941 19.627 TA T True 301 159,142 1 TA>TA
NC_003310.1 162944 162945 66.590 ACAT A True 301 159,142 1 AC>AC
NC_003310.1 162981 162982 59.460 T C False 301 159,142 1 TT>CT
NC_003310.1 163192 163193 55.913 C T False 298 157,141 1 CG>TG
NC_003310.1 163611 163612 61.833 G A False 256 124,132 1 GG>AG
NC_003310.1 164557 164558 65.257 C T False 292 152,140 1 CG>TG
NC_003310.1 164573 164575 130.515 CA TG True 288 149,139 2 NA
NC_003310.1 164731 164732 65.257 A G False 285 150,135 1 AA>GA
NC_003310.1 164778 164781 119.946 A ATC True 284 150,134 3 NA
NC_003310.1 164819 164820 62.705 G A False 311 166,145 1 GC>AC
NC_003310.1 165027 165028 65.257 C T False 311 167,144 1 CG>TG
NC_003310.1 165414 165415 57.934 T C False 285 158,127 1 TC>CC
NC_003310.1 165729 165730 61.108 T C False 288 152,136 1 TA>CA
NC_003310.1 165813 165814 184.168 AAATAATT A True 288 152,136 1 AA>AA
NC_003310.1 165926 165927 62.705 T C False 285 150,135 1 TG>CG
NC_003310.1 166039 166040 63.796 A C False 297 155,142 1 AG>CG
NC_003310.1 166129 166130 62.705 G T False 293 152,141 1 GC>TC
NC_003310.1 166248 166249 62.705 A G False 317 163,154 1 AC>GC
NC_003310.1 166384 166387 121.335 A ATT True 313 158,155 3 NA
NC_003310.1 166438 166440 59.460 G GT True 319 161,158 2 NA
NC_003310.1 166661 166662 65.257 C T False 306 154,152 1 CG>TG
NC_003310.1 166756 166757 61.833 A G False 295 148,147 1 AA>GA
NC_003310.1 166791 166792 63.796 T C False 313 157,156 1 TA>CA
NC_003310.1 166853 166854 59.460 T C False 329 165,164 1 TG>CG
NC_003310.1 167383 167384 65.257 G T False 290 145,145 1 GA>TA
NC_003310.1 167585 167586 65.257 C T False 324 155,169 1 CA>TA
NC_003310.1 167847 167848 29.560 C T False 304 141,163 1 CT>TT
NC_003310.1 167905 167906 55.171 TA T True 304 141,163 1 TA>TA
NC_003310.1 167913 167914 65.257 C T False 304 141,163 1 CA>TA
NC_003310.1 167941 167943 63.796 C CT True 304 141,163 2 NA
NC_003310.1 167953 167954 58.268 T C False 304 141,163 1 TA>CA
NC_003310.1 168004 168005 67.476 C A False 290 134,156 1 CA>AA
NC_003310.1 168193 168194 59.943 A C False 284 130,154 1 AC>CC
NC_003310.1 168315 168316 62.705 C G False 309 146,163 1 CT>GT
NC_003310.1 168496 168497 59.943 T C False 310 142,168 1 TG>CG
NC_003310.1 168682 168684 59.460 T TA True 336 154,182 2 NA
NC_003310.1 168713 168714 61.833 A C False 335 154,181 1 AG>CG
NC_003310.1 168749 168751 55.715 G GA True 335 154,181 2 NA
NC_003310.1 168806 168807 61.833 G A False 310 145,165 1 GA>AA
NC_003310.1 168850 168851 61.108 T C False 309 143,166 1 TG>CG
NC_003310.1 168867 168868 65.257 C T False 313 144,169 1 CG>TG
NC_003310.1 168886 168888 61.108 G GT True 321 149,172 2 NA
NC_003310.1 169077 169078 60.486 G A False 276 128,148 1 GT>AT
NC_003310.1 169250 169251 47.462 AT A True 242 114,128 1 AT>AT
NC_003310.1 169305 169307 54.844 G GA True 243 115,128 2 NA
NC_003310.1 169324 169325 28.663 GA G True 243 115,128 1 GA>GA
NC_003310.1 169328 169329 70.373 ATGG A True 245 115,130 1 AT>AT
NC_003310.1 169347 169348 95.036 ACAT A True 274 131,143 1 AC>AC
NC_003310.1 169403 169404 63.796 A G False 269 130,139 1 AT>GT
NC_003310.1 169448 169455 326.407 G GGATTCA True 256 123,133 7 NA
NC_003310.1 169483 169484 59.943 T C False 258 123,135 1 TA>CA
NC_003310.1 169501 169522 1100.820 T TAGAAGATAT...(21) True 258 123,135 21 NA
NC_003310.1 169599 169600 62.705 C T False 249 118,131 1 CG>TG
NC_003310.1 169714 169715 51.278 TA T True 240 112,128 1 TA>TA
NC_003310.1 169743 169744 46.484 C T False 250 118,132 1 CA>TA
NC_003310.1 169783 169784 50.944 G A False 250 118,132 1 GA>AA
NC_003310.1 169954 169955 60.486 G A False 229 107,122 1 GA>AA
NC_003310.1 169968 169969 56.337 G A False 229 107,122 1 GG>AG
NC_003310.1 170041 170042 65.257 G A False 234 109,125 1 GT>AT
NC_003310.1 170141 170142 61.833 G A False 244 114,130 1 GA>AA
NC_003310.1 170619 170621 41.430 T TG True 204 97,107 2 NA
NC_003310.1 170634 170635 290.054 GATATCTGAT...(15) G True 204 97,107 1 GA>GA
NC_003310.1 170718 170719 58.630 T C False 188 89,99 1 TA>CA
NC_003310.1 171280 171281 61.833 T C False 179 88,91 1 TC>CC
NC_003310.1 171394 171395 65.257 G A False 179 88,91 1 GA>AA
NC_003310.1 171777 171779 62.705 A AT True 122 62,60 2 NA
NC_003310.1 171804 171805 17.039 TA T True 120 62,58 1 TA>TA
NC_003310.1 171906 171907 55.171 G A False 98 51,47 1 GC>AC
NC_003310.1 172022 172023 57.623 G A False 91 47,44 1 GC>AC
NC_003310.1 172268 172269 61.108 G A False 72 38,34 1 GG>AG
NC_003310.1 172362 172363 56.119 T C False 49 26,23 1 TT>CT
NC_003310.1 172389 172390 63.796 T C False 49 26,23 1 TA>CA
NC_003310.1 173375 173376 19.885 AT A True 20 10,10 1 AT>AT
NC_003310.1 173425 173427 45.336 A AT True 20 10,10 2 NA
NC_003310.1 173494 173496 69.068 GC AT True 30 15,15 2 NA
NC_003310.1 173567 173568 58.630 T C False 30 15,15 1 TG>CG
NC_003310.1 173659 173660 51.209 G A False 47 23,24 1 GC>AC
NC_003310.1 173729 173730 61.833 T A False 50 24,26 1 TG>AG
NC_003310.1 173787 173788 63.796 A C False 50 24,26 1 AG>CG
NC_003310.1 173831 173832 56.807 T C False 50 24,26 1 TT>CT
NC_003310.1 173855 173856 62.705 C T False 50 24,26 1 CA>TA
NC_003310.1 173868 173869 61.108 T G False 50 24,26 1 TA>GA
NC_003310.1 173986 173987 61.833 A G False 51 24,27 1 AT>GT
NC_003310.1 174146 174147 6.724 AT A True 140 71,69 1 AT>AT
NC_003310.1 174204 174217 637.371 T TGATGAAGAT...(13) True 142 73,69 13 NA
NC_003310.1 174529 174530 62.705 C T False 174 85,89 1 CA>TA
NC_003310.1 174739 174740 63.796 A C False 186 92,94 1 AC>CC
NC_003310.1 175638 175639 62.705 T C False 241 119,122 1 TG>CG
NC_003310.1 175834 175835 59.943 C T False 262 128,134 1 CG>TG
NC_003310.1 176127 176128 62.705 T C False 286 136,150 1 TG>CG
NC_003310.1 176375 176376 65.257 A G False 280 132,148 1 AT>GT
NC_003310.1 176389 176390 59.460 A G False 280 132,148 1 AG>GG
NC_003310.1 176841 176842 61.108 G T False 272 131,141 1 GG>TG
NC_003310.1 177191 177192 62.705 C T False 215 96,119 1 CT>TT
NC_003310.1 177398 177399 45.480 C T False 141 63,78 1 CA>TA
NC_003310.1 177521 177522 377.983 CATCTCAATC...(19) C True 140 63,77 1 CA>CA
NC_003310.1 177545 177546 56.337 A G False 133 59,74 1 AA>GA
NC_003310.1 177732 177733 13.571 GTT G True 99 39,60 1 GT>GT
NC_003310.1 177827 177828 63.796 G A False 97 39,58 1 GA>AA
NC_003310.1 177848 177849 38.596 CTT C True 97 39,58 1 CT>CT
NC_003310.1 177933 177934 61.833 C T False 92 37,55 1 CT>TT
NC_003310.1 177971 177972 62.705 C T False 91 37,54 1 CC>TC
NC_003310.1 178007 178008 56.337 C A False 64 29,35 1 CT>AT
NC_003310.1 178021 178023 62.705 T TA True 64 29,35 2 NA
NC_003310.1 178090 178091 59.460 G A False 64 29,35 1 GT>AT
NC_003310.1 178118 178119 63.796 G A False 64 29,35 1 GA>AA
NC_003310.1 178235 178236 59.460 G A False 64 29,35 1 GG>AG
NC_003310.1 178334 178335 60.486 A G False 52 26,26 1 AC>GC
NC_003310.1 178397 178398 52.291 T C False 52 26,26 1 TG>CG
NC_003310.1 178486 178487 57.934 A G False 52 26,26 1 AA>GA
NC_003310.1 178582 178583 63.796 A G False 25 16,9 1 AC>GC
NC_003310.1 178718 178719 53.614 A G False 24 15,9 1 AA>GA
NC_003310.1 178920 178921 37.546 AT A True 77 40,37 1 AT>AT
NC_003310.1 178923 178924 52.204 G A False 77 40,37 1 GT>AT
NC_003310.1 178930 178931 33.491 AT A True 76 39,37 1 AT>AT
NC_003310.1 178933 178934 48.725 G A False 69 36,33 1 GT>AT
NC_003310.1 179063 179064 59.943 T C False 72 37,35 1 TA>CA
NC_003310.1 179175 179176 61.108 T C False 95 47,48 1 TG>CG
NC_003310.1 179235 179236 59.025 C A False 95 47,48 1 CT>AT
NC_003310.1 179286 179287 63.796 T G False 95 47,48 1 TA>GA
NC_003310.1 179387 179388 61.833 C T False 125 65,60 1 CA>TA
NC_003310.1 179860 179861 63.796 G A False 171 85,86 1 GC>AC
NC_003310.1 179894 179895 63.796 C T False 172 86,86 1 CA>TA
NC_003310.1 180132 180133 61.108 A T False 196 98,98 1 AA>TA
NC_003310.1 180245 180246 61.108 G A False 221 111,110 1 GT>AT
NC_003310.1 180275 180276 55.345 T C False 222 112,110 1 TT>CT
NC_003310.1 180798 180808 443.868 G GTATATTCCT True 250 125,125 10 NA
NC_003310.1 180921 180922 65.257 C T False 257 129,128 1 CA>TA
NC_003310.1 180998 180999 80.198 AAT A True 268 133,135 1 AA>AA
NC_003310.1 181040 181042 127.592 GT AC True 270 135,135 2 NA
NC_003310.1 181054 181055 61.108 A T False 270 135,135 1 AC>TC
NC_003310.1 181338 181339 65.257 A C False 312 153,159 1 AT>CT
NC_003310.1 181480 181481 61.108 G A False 295 146,149 1 GC>AC
NC_003310.1 181562 181563 65.257 A G False 301 149,152 1 AT>GT
NC_003310.1 181670 181671 67.476 G A False 287 142,145 1 GA>AA
NC_003310.1 181684 181685 65.257 G A False 287 142,145 1 GC>AC
NC_003310.1 181723 181724 63.796 C T False 286 141,145 1 CA>TA
NC_003310.1 182038 182039 59.025 C A False 264 133,131 1 CT>AT
NC_003310.1 182046 182047 61.833 T A False 264 133,131 1 TT>AT
NC_003310.1 182133 182134 61.833 G A False 263 132,131 1 GC>AC
NC_003310.1 182181 182182 62.705 G A False 262 132,130 1 GT>AT
NC_003310.1 182589 182590 65.257 C T False 251 130,121 1 CG>TG
NC_003310.1 182642 182644 122.064 TC CT True 226 117,109 2 NA
NC_003310.1 182698 182699 63.796 C T False 226 117,109 1 CA>TA
NC_003310.1 183181 183183 122.320 GA AC True 226 114,112 2 NA
NC_003310.1 183209 183210 61.108 C T False 226 114,112 1 CC>TC
NC_003310.1 183212 183213 61.833 A C False 226 114,112 1 AC>CC
NC_003310.1 183242 183246 172.279 T TTAC True 235 119,116 4 NA
NC_003310.1 183382 183384 118.398 GC AT True 243 127,116 2 NA
NC_003310.1 183405 183406 59.943 C T False 243 127,116 1 CG>TG
NC_003310.1 183607 183608 58.630 C T False 241 125,116 1 CA>TA
NC_003310.1 183824 183825 65.257 G A False 241 124,117 1 GC>AC
NC_003310.1 183973 183974 61.108 C T False 236 121,115 1 CT>TT
NC_003310.1 184955 184956 62.705 A G False 189 96,93 1 AC>GC
NC_003310.1 185060 185061 65.257 G A False 254 129,125 1 GC>AC
NC_003310.1 185159 185160 63.796 A G False 267 135,132 1 AC>GC
NC_003310.1 185449 185450 62.705 G A False 272 137,135 1 GA>AA
NC_003310.1 185587 185588 58.268 C T False 280 144,136 1 CT>TT
NC_003310.1 185764 185765 61.833 C T False 279 144,135 1 CG>TG
NC_003310.1 186153 186154 63.796 G T False 336 174,162 1 GT>TT
NC_003310.1 186190 186191 63.796 C T False 331 169,162 1 CG>TG
NC_003310.1 186192 186193 59.943 G A False 331 169,162 1 GT>AT
NC_003310.1 186218 186220 122.647 GT TC True 291 153,138 2 NA
NC_003310.1 186265 186266 65.257 G A False 283 149,134 1 GA>AA
NC_003310.1 186527 186528 61.108 T C False 275 141,134 1 TT>CT
NC_003310.1 186631 186632 62.705 T G False 281 144,137 1 TC>GC
NC_003310.1 186767 186768 42.322 TA T True 282 145,137 1 TA>TA
NC_003310.1 186833 186834 62.705 A G False 313 160,153 1 AA>GA
NC_003310.1 186894 186896 65.257 G GT True 312 160,152 2 NA
NC_003310.1 187032 187033 63.796 C T False 318 164,154 1 CA>TA
NC_003310.1 187108 187109 63.796 T C False 320 166,154 1 TA>CA
NC_003310.1 187115 187116 63.796 C T False 320 166,154 1 CA>TA
NC_003310.1 187185 187186 59.025 G A False 320 166,154 1 GC>AC
NC_003310.1 187220 187221 57.062 A C False 320 166,154 1 AT>CT
NC_003310.1 187456 187458 57.623 G GT True 321 172,149 2 NA
NC_003310.1 187525 187526 63.796 C T False 333 177,156 1 CA>TA
NC_003310.1 187582 187583 62.705 T G False 332 177,155 1 TG>GG
NC_003310.1 187600 187601 62.705 A G False 324 175,149 1 AC>GC
NC_003310.1 187629 187630 41.387 TA T True 323 172,151 1 TA>TA
NC_003310.1 187651 187652 62.705 C T False 315 167,148 1 CA>TA
NC_003310.1 187783 187784 61.108 C A False 325 173,152 1 CT>AT
NC_003310.1 188036 188037 100.475 AAATAT A True 312 166,146 1 AA>AA
NC_003310.1 188229 188230 65.257 C T False 338 185,153 1 CA>TA
NC_003310.1 188270 188271 39.702 TG T True 339 185,154 1 TG>TG
NC_003310.1 188327 188328 47.982 AT A True 347 191,156 1 AT>AT
NC_003310.1 188420 188421 61.833 A G False 357 197,160 1 AA>GA
NC_003310.1 188441 188442 62.705 C A False 403 225,178 1 CT>AT
NC_003310.1 188506 188507 61.833 G A False 402 223,179 1 GC>AC
NC_003310.1 188518 188519 62.705 A G False 402 223,179 1 AC>GC
NC_003310.1 188565 188566 65.257 G A False 405 224,181 1 GT>AT
NC_003310.1 188873 188874 54.118 TA T True 377 213,164 1 TA>TA
NC_003310.1 188901 188902 58.268 T C False 376 212,164 1 TT>CT
NC_003310.1 189113 189114 56.337 G A False 358 201,157 1 GA>AA
NC_003310.1 189304 189305 62.705 T C False 333 185,148 1 TG>CG
NC_003310.1 189433 189435 56.119 A AT True 290 165,125 2 NA
NC_003310.1 189505 189506 62.705 G T False 292 165,127 1 GA>TA
NC_003310.1 189590 189591 65.257 G A False 304 168,136 1 GT>AT
NC_003310.1 189603 189604 65.257 C A False 302 167,135 1 CA>AA
NC_003310.1 189746 189747 72.791 TAC T True 290 161,129 1 TA>TA
NC_003310.1 189794 189795 62.705 G T False 290 161,129 1 GG>TG
NC_003310.1 189850 189851 61.108 A G False 284 156,128 1 AC>GC
NC_003310.1 189893 189896 121.776 T TAC True 290 158,132 3 NA
NC_003310.1 190089 190091 55.171 T TA True 283 154,129 2 NA
NC_003310.1 190097 190098 63.796 T G False 283 154,129 1 TT>GT
NC_003310.1 190289 190290 63.796 G T False 305 163,142 1 GC>TC
NC_003310.1 190341 190342 60.486 T A False 287 157,130 1 TA>AA
NC_003310.1 190465 190466 65.257 A C False 286 154,132 1 AG>CG
NC_003310.1 190646 190647 63.772 GAA G True 305 164,141 1 GA>GA
NC_003310.1 190746 190747 62.705 G A False 307 165,142 1 GC>AC
NC_003310.1 190759 190760 67.476 C T False 307 165,142 1 CA>TA
NC_003310.1 190829 190830 61.833 C T False 291 157,134 1 CT>TT
NC_003310.1 191096 191097 57.062 A G False 271 145,126 1 AC>GC
NC_003310.1 191154 191155 60.486 T C False 275 147,128 1 TT>CT
NC_003310.1 191565 191566 57.062 A G False 180 90,90 1 AC>GC
NC_003310.1 192069 192070 53.986 C A False 178 87,91 1 CT>AT
NC_003310.1 192129 192341 2832.500 T TAAGTCATAA...(212) True 180 91,89 212 NA
NC_003310.1 192131 192132 46.415 T C False 178 89,89 1 TA>CA
NC_003310.1 192221 192222 36.509 GA G True 157 77,80 1 GA>GA
NC_003310.1 192781 192782 62.705 T C False 176 93,83 1 TG>CG
NC_003310.1 193005 193006 61.833 G A False 178 94,84 1 GA>AA
NC_003310.1 193301 193302 62.705 C T False 157 86,71 1 CG>TG
NC_003310.1 193373 193374 65.257 C T False 158 87,71 1 CA>TA
NC_003310.1 193403 193404 63.796 C T False 156 87,69 1 CA>TA
NC_003310.1 193680 193681 62.705 A G False 162 91,71 1 AA>GA
NC_003310.1 193712 193713 63.796 C T False 168 93,75 1 CC>TC
NC_003310.1 193724 193725 61.833 C A False 169 94,75 1 CT>AT
NC_003310.1 194060 194061 35.059 CT C True 147 83,64 1 CT>CT
NC_003310.1 194136 194137 59.460 T A False 148 83,65 1 TT>AT
NC_003310.1 194165 194166 65.257 A G False 146 83,63 1 AT>GT
NC_003310.1 194233 194234 61.108 C T False 146 83,63 1 CC>TC
NC_003310.1 194270 194271 59.943 G A False 145 83,62 1 GC>AC
NC_003310.1 194433 194434 59.025 T G False 145 83,62 1 TC>GC
NC_003310.1 194581 194585 164.504 C CCGT True 141 83,58 4 NA
NC_003310.1 194735 194736 58.630 C A False 142 84,58 1 CG>AG
NC_003310.1 195007 195009 116.253 CG AT True 136 80,56 2 NA
NC_003310.1 195123 195124 26.066 GTT G True 131 79,52 1 GT>GT
NC_003310.1 195136 195137 49.719 C T False 131 79,52 1 CA>TA
NC_003310.1 195319 195320 59.943 C T False 120 73,47 1 CT>TT
NC_003310.1 195514 195515 61.108 C T False 115 71,44 1 CG>TG
NC_003310.1 195561 195562 63.796 C T False 105 66,39 1 CA>TA
NC_003310.1 195622 195623 52.291 A G False 103 65,38 1 AG>GG
NC_003310.1 195730 195731 61.833 C T False 89 58,31 1 CG>TG
NC_003310.1 195829 195830 53.735 T C False 86 57,29 1 TA>CA
NC_003310.1 196067 196068 23.247 GT G True 71 46,25 1 GT>GT
NC_003310.1 196069 196070 20.141 GT G True 71 46,25 1 GT>GT
NC_003310.1 196077 196078 51.565 T C False 71 46,25 1 TA>CA
NC_003310.1 196106 196107 57.934 G A False 71 46,25 1 GT>AT
NC_003310.1 196194 196195 186.037 TTTCTCTC T True 56 39,17 1 TT>TT
NC_003310.1 196203 196204 52.119 T G False 56 39,17 1 TG>GG
NC_003310.1 196210 196212 53.271 T TA True 56 39,17 2 NA
NC_003310.1 196222 196230 255.191 C CAAAAAAA True 56 39,17 8 NA
NC_003310.1 196347 196348 61.833 T C False 54 37,17 1 TA>CA
NC_003310.1 196356 196357 57.334 G A False 53 37,16 1 GC>AC
NC_003310.1 196618 196619 53.056 G T False 37 23,14 1 GT>TT
NC_003310.1 196694 196695 47.128 G A False 31 19,12 1 GG>AG

De novo assembly

The plot below shows an alignment of de novo assembly contigs to the chosen reference sequence.

Software versions

The table below highlights versions of key software used within the analysis.

Name Version
pysam 0.22.0
fastcat 0.18.6
bedtools v2.31.0
flye 2.9.2-b1786
bcftools 1.18
medaka 1.12.0
nextclade 2.14.0

Workflow parameters

The table below highlights values of the main parameters used in this analysis.

Key Value
fastq test_data/fastq/barcode01
bam None
out_dir wf-mpx
sample None
assembly True
override_basecaller_cfg None
min_coverage 20
store_dir wf-mpx/store_dir
_reference /builds/kcaVU3FG/0/epi2melabs/workflows/wf-mpx/data/references/NC_003310.1.fasta
_genbank /builds/kcaVU3FG/0/epi2melabs/workflows/wf-mpx/data/references/NC_003310.1.gb

About

This report was produced using the epi2me-labs/wf-mpx. The workflow can be run using nextflow epi2me-labs/wf-mpx --help

Version details Revision: unknown Git Commit: unknown

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