This repository contains a nextflow workflow to review and consolidates transcripts of interest from direct RNA sequencing collections. This workflow can also be used for more general assessment of transcripts of interest.
The workflow uses nextflow to manage compute and software resources, as such nextflow will need to be installed before attempting to run the workflow.
It is not required to clone or download the git repository in order to run the workflow. For more information on running EPI2ME Labs workflows visit out website.
To obtain the workflow, having installed
nextflow, users can run:
nextflow run epi2me-labs/wf-transcript-target --help
to see the options for the workflow.
The primary outputs of the workflow include: