Real-time bioinformatics with Nextflow and Kraken2![Sarah Griffiths]()
Oxford nanopore is the only sequencing platform to offer the possibility of real-time analysis…
September 15, 2022
6 min
Published by Author 6
Bioinformatician
I'm a bioinformatician working on creating new workflows and ensuring our analysis notebooks are maintained for all levels of EPI2ME Labs' users.
Expertise
Bioinformatics
Data Visualization
Phasing and Whatshap![Sarah Griffiths]()
Phasing, also referred to as haplotyping, relates to methods used to infer which genetic variants…
November 26, 2021
3 min
Nextflow in Windows with WSL2![Sarah Griffiths]()
For EPI2ME Labs version 3 and onward the setup of Windows Subsytem for Linux is automated
provided…
October 20, 2021
3 min
Assembly tools and Flye![Sarah Griffiths]()
Assembly is required because sample extraction, processing, handling and sequencing can lead to the…
August 06, 2021
4 min
Quality Scores And Read Accuracy![Sarah Griffiths]()
In this brief post we will examine the concepts of read accuracy and read
quality scores, and how…
July 01, 2021
6 min
Snakemake vs Nextflow![Sarah Griffiths]()
These two popular workflow management projects were started in 2014 and 2013 respectively and likely…
June 13, 2021
2 min
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